Mercurial > repos > devteam > samtools_slice_bam

diff samtools_slice_bam.xml @ 6:bfeeedad5354 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_slice_bam commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"
author iuc
date Thu, 05 Sep 2019 19:33:00 -0400
parents 22a1a2406fe9
children 88d7ed7fd423
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line diff
--- a/samtools_slice_bam.xml	Sun Jul 28 14:49:56 2019 -0400
+++ b/samtools_slice_bam.xml	Thu Sep 05 19:33:00 2019 -0400
@@ -28,7 +28,7 @@
 
     samtools sort
         -O bam
-        -T sorted
+        -T "\${TMPDIR:-.}"
         -@ \${GALAXY_SLOTS:-1}
         -o '${output_bam}'
         unsorted_output.bam