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comparison samtools_slice_bam.xml @ 6:bfeeedad5354 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_slice_bam commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"
author iuc
date Thu, 05 Sep 2019 19:33:00 -0400
parents 22a1a2406fe9
children 88d7ed7fd423
comparison
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5:dc73a288da03 6:bfeeedad5354
26 && 26 &&
27 #end if 27 #end if
28 28
29 samtools sort 29 samtools sort
30 -O bam 30 -O bam
31 -T sorted 31 -T "\${TMPDIR:-.}"
32 -@ \${GALAXY_SLOTS:-1} 32 -@ \${GALAXY_SLOTS:-1}
33 -o '${output_bam}' 33 -o '${output_bam}'
34 unsorted_output.bam 34 unsorted_output.bam
35 ]]></command> 35 ]]></command>
36 <inputs> 36 <inputs>