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annotate remove_beginning.xml @ 0:19d2ccf95640 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 11:51:52 -0500
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1 <tool id="Remove beginning1" name="Remove beginning" version="1.0.0">
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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2 <description>of a file</description>
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3 <command interpreter="perl">remove_beginning.pl "${input}" "${num_lines}" "${out_file1}"</command>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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4 <inputs>
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5 <param name="num_lines" type="integer" value="1" label="Remove first" help="lines"/>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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6 <param format="txt" name="input" type="data" label="from"/>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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7 </inputs>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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8 <outputs>
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9 <data format="input" name="out_file1" metadata_source="input"/>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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10 </outputs>
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11 <tests>
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12 <test>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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13 <param name="num_lines" value="5"/>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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14 <param name="input" value="1.bed"/>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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15 <output name="out_file1" file="eq-removebeginning.dat"/>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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16 </test>
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17 </tests>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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18 <help>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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19
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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20 **What it does**
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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21
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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22 This tool removes a specified number of lines from the beginning of a dataset.
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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23
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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24 -----
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25
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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26 **Example**
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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27
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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28 Input File::
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29
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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30 chr7 56632 56652 D17003_CTCF_R6 310 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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31 chr7 56736 56756 D17003_CTCF_R7 354 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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32 chr7 56761 56781 D17003_CTCF_R4 220 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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33 chr7 56772 56792 D17003_CTCF_R7 372 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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34 chr7 56775 56795 D17003_CTCF_R4 207 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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35
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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36 After removing the first 3 lines the dataset will look like this::
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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37
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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38 chr7 56772 56792 D17003_CTCF_R7 372 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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39 chr7 56775 56795 D17003_CTCF_R4 207 +
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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40
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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41 </help>
19d2ccf95640 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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42 </tool>