Mercurial > repos > devteam > package_ucsc_viz

annotate tool_dependencies.xml @ 0:1d76d9d48045 draft default tip

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author devteam
date Mon, 12 May 2014 16:52:27 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ucsc_galaxy_viz" version="0.1">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions os="linux" architecture="x86_64">
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7 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig</action>
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8 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</action>
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9 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit</action>
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10 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action>
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11 <action type="shell_command">chmod ugo+x *</action>
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12 <action type="move_directory_files">
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13 <source_directory>.</source_directory>
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14 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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15 </action>
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16 </actions>
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17
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18 <actions os="darwin" architecture="x86_64">
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19 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigToBigWig</action>
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20 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</action>
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21 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTwoBit</action>
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22 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action>
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23 <action type="shell_command">chmod ugo+x *</action>
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24 <action type="move_directory_files">
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25 <source_directory>.</source_directory>
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26 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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27 </action>
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28 </actions>
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29
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30 <action type="set_environment">
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31 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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32 </action>
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33 </actions_group>
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34 </install>
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35 <readme>
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36 UCSC tools needed for by Galaxy visualization data providers.
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37 </readme>
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38 </package>
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39 </tool_dependency>