Mercurial > repos > devteam > package_emboss_5_0_0

annotate tool_dependencies.xml @ 6:64b58c8f2827 draft

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Uploaded updated tool dependency definition.
author devteam
date Wed, 04 Dec 2013 13:55:59 -0500
parents 69d798291360
children 27b61d58dfb4
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libx11" version="1.5.0">
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4 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="libxproto" version="7.0.23">
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7 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="libxcb" version="1.9.1">
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10 <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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11 </package>
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12 <package name="emboss" version="5.0.0">
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13 <install version="1.0">
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14 <actions>
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15 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
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16 <action type="set_environment_for_install">
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17 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
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18 <package name="libx11" version="1.5.0" />
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19 </repository>
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20 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
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21 <package name="libxproto" version="7.0.23" />
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22 </repository>
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23 <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
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24 <package name="libxcb" version="1.9.1" />
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25 </repository>
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26 </action>
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27 <action type="shell_command">
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28 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
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29 export LDFLAGS="-L$XCB_LIBS" &amp;&amp; \
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30 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
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31 </action>
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32 <action type="shell_command">make &amp;&amp; make install</action>
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0e97d4936c23 Uploaded tool_dependencies.xml modified to use the cheetah syntax contributed by B. Gruning.
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33 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
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34 <action type="change_directory">PHYLIP-3.6b</action>
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35 <action type="shell_command">
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36 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
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37 export LDFLAGS="-L$XCB_LIBS" &amp;&amp; \
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38 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
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39 </action>
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40 <action type="shell_command">make &amp;&amp; make install</action>
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41 <action type="set_environment">
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42 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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43 </action>
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44 </actions>
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45 </install>
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46 <readme>
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47 These links provide information for building the Emboss package in most environments.
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9fd501d0f295 Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
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49 System requirements
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50 http://emboss.sourceforge.net/download/#Requirements
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52 Platform-dependent notes
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53 http://emboss.sourceforge.net/download/#Platforms
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54 </readme>
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55 </package>
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56 </tool_dependency>