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view tool_dependencies.xml @ 1:702c422027de draft

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Uploaded tool dependency that puts the qvalue R library in the correct place.
author devteam
date Thu, 06 Mar 2014 16:29:35 -0500
parents a02c837d46ce
children 6f9d6148c957
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="2.11.0">
        <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bioc_qvalue" version="1.34.0">
        <install version="1.0">
            <actions>
                <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="R" version="2.11.0" />
                    </repository>
                </action>
                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>