Mercurial > repos > devteam > package_bioc_qvalue_1_34_0

comparison tool_dependencies.xml @ 1:702c422027de draft

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Uploaded tool dependency that puts the qvalue R library in the correct place.
author devteam
date Thu, 06 Mar 2014 16:29:35 -0500
parents a02c837d46ce
children 6f9d6148c957
comparison
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0:a02c837d46ce 1:702c422027de
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="R" version="2.11.0"> 3 <package name="R" version="2.11.0">
4 <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bioc_qvalue" version="1.34.0"> 6 <package name="bioc_qvalue" version="1.34.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action> 9 <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
10 <action type="set_environment_for_install"> 10 <action type="set_environment_for_install">
11 <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
12 <package name="R" version="2.11.0" /> 12 <package name="R" version="2.11.0" />
13 </repository> 13 </repository>
14 </action> 14 </action>
15 <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action> 15 <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
16 <action type="set_environment"> 16 <action type="set_environment">
17 <environment_variable action="set_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable> 17 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
18 </action> 18 </action>
19 </actions> 19 </actions>
20 </install> 20 </install>
21 <readme> 21 <readme>
22 </readme> 22 </readme>