Mercurial > repos > devteam > package_bioc_qvalue_1_34_0

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_bioc_qvalue_1_34_0 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:33:46 -0500
parents 702c422027de
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="2.11.0">
6f9d6148c957 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_bioc_qvalue_1_34_0 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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4 <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="bioc_qvalue" version="1.34.0">
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7 <install version="1.0">
6f9d6148c957 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_bioc_qvalue_1_34_0 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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8 <actions>
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9 <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="R" version="2.11.0" />
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13 </repository>
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14 </action>
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702c422027de Uploaded tool dependency that puts the qvalue R library in the correct place.
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15 <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
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16 <action type="set_environment">
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17 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 </readme>
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23 </package>
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24 </tool_dependency>