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comparison test-data/fastqc_data_nogroup.txt @ 22:a35575615aa4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 9aa395df821f0d3607867c83536ac97f9ffe8b29
author iuc
date Thu, 08 Jun 2023 20:01:52 +0000
parents b44429593dd8
children
comparison
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21:b44429593dd8 22:a35575615aa4
1 ##FastQC 0.11.9 1 ##FastQC 0.12.1
2 >>Basic Statistics pass 2 >>Basic Statistics pass
3 #Measure Value 3 #Measure Value
4 Filename 1000trimmed_fastq 4 Filename 1000trimmed_fastq
5 File type Conventional base calls 5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9 6 Encoding Sanger / Illumina 1.9
7 Total Sequences 4905 7 Total Sequences 4905
8 Total Bases 254.2 kbp
8 Sequences flagged as poor quality 0 9 Sequences flagged as poor quality 0
9 Sequence length 1-108 10 Sequence length 1-108
10 %GC 40 11 %GC 40
11 >>END_MODULE 12 >>END_MODULE
12 >>Per base sequence quality pass 13 >>Per base sequence quality pass
575 107 169.0 576 107 169.0
576 108 1122.0 577 108 1122.0
577 >>END_MODULE 578 >>END_MODULE
578 >>Sequence Duplication Levels pass 579 >>Sequence Duplication Levels pass
579 #Total Deduplicated Percentage 98.73598369011212 580 #Total Deduplicated Percentage 98.73598369011212
580 #Duplication Level Percentage of deduplicated Percentage of total 581 #Duplication Level Percentage of total
581 1 99.44249432170142 98.1855249745158 582 1 98.1855249745158
582 2 0.47491224447656405 0.9378185524974516 583 2 0.9378185524974516
583 3 0.041296716911005574 0.12232415902140673 584 3 0.12232415902140673
584 4 0.020648358455502787 0.08154943934760449 585 4 0.08154943934760449
585 5 0.0 0.0 586 5 0.0
586 6 0.0 0.0 587 6 0.0
587 7 0.0 0.0 588 7 0.0
588 8 0.0 0.0 589 8 0.0
589 9 0.0 0.0 590 9 0.0
590 >10 0.020648358455502787 0.672782874617737 591 >10 0.672782874617737
591 >50 0.0 0.0 592 >50 0.0
592 >100 0.0 0.0 593 >100 0.0
593 >500 0.0 0.0 594 >500 0.0
594 >1k 0.0 0.0 595 >1k 0.0
595 >5k 0.0 0.0 596 >5k 0.0
596 >10k+ 0.0 0.0 597 >10k+ 0.0
597 >>END_MODULE 598 >>END_MODULE
598 >>Overrepresented sequences warn 599 >>Overrepresented sequences warn
599 #Sequence Count Percentage Possible Source 600 #Sequence Count Percentage Possible Source
600 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT 33 0.672782874617737 No Hit 601 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT 33 0.672782874617737 No Hit
601 >>END_MODULE 602 >>END_MODULE
602 >>Adapter Content pass 603 >>Adapter Content pass
603 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 604 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence PolyA PolyG
604 1 0.0 0.0 0.0 0.0 0.0 605 1 0.0 0.0 0.0 0.0 0.020387359836901122 0.0
605 2 0.0 0.0 0.0 0.0 0.0 606 2 0.0 0.0 0.0 0.0 0.06116207951070336 0.0
606 3 0.0 0.0 0.0 0.0 0.0 607 3 0.0 0.0 0.0 0.0 0.06116207951070336 0.0
607 4 0.0 0.0 0.0 0.0 0.0 608 4 0.0 0.0 0.0 0.0 0.06116207951070336 0.0
608 5 0.0 0.0 0.0 0.0 0.0 609 5 0.0 0.0 0.0 0.0 0.12232415902140673 0.0
609 6 0.0 0.0 0.0 0.0 0.0 610 6 0.0 0.0 0.0 0.0 0.12232415902140673 0.0
610 7 0.0 0.0 0.0 0.0 0.0 611 7 0.0 0.0 0.0 0.0 0.12232415902140673 0.0
611 8 0.0 0.0 0.0 0.0 0.0 612 8 0.0 0.0 0.0 0.0 0.14271151885830785 0.0
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614 11 0.0 0.0 0.0 0.0 0.0 615 11 0.0 0.0 0.0 0.0 0.14271151885830785 0.0
615 12 0.0 0.0 0.0 0.0 0.0 616 12 0.0 0.0 0.0 0.0 0.14271151885830785 0.0
616 13 0.0 0.0 0.0 0.0 0.0 617 13 0.0 0.0 0.0 0.0 0.16309887869520898 0.0
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619 16 0.0 0.0 0.0 0.0 0.0 620 16 0.0 0.0 0.0 0.0 0.2038735983690112 0.0
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701 >>END_MODULE 702 >>END_MODULE