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comparison test-data/fastqc_data.txt @ 13:7d8c56e1a3aa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 35d722c0cafe2a2f2e4e2f73c265ae56ae237997
author iuc
date Fri, 24 Nov 2017 08:18:18 -0500
parents e8c90ad3cbf9
children da652f6f84cc
comparison
equal deleted inserted replaced
12:919cf12bb71c 13:7d8c56e1a3aa
1 ##FastQC 0.11.4 1 ##FastQC 0.11.5
2 >>Basic Statistics pass 2 >>Basic Statistics pass
3 #Measure Value 3 #Measure Value
4 Filename 1000gsample.fastq 4 Filename 1000gsample_fastq_bz2_dat.bz2
5 File type Conventional base calls 5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9 6 Encoding Sanger / Illumina 1.9
7 Total Sequences 5000 7 Total Sequences 5000
8 Sequences flagged as poor quality 0 8 Sequences flagged as poor quality 0
9 Sequence length 54 9 Sequence length 54
636 30 234.0 636 30 234.0
637 31 122.0 637 31 122.0
638 32 51.0 638 32 51.0
639 33 5.0 639 33 5.0
640 >>END_MODULE 640 >>END_MODULE
641 >>Per base sequence content warn 641 >>Per base sequence content pass
642 #Base G A T C 642 #Base G A T C
643 1 21.5 32.64 25.919999999999998 19.939999999999998 643 1 21.5 32.64 25.919999999999998 19.939999999999998
644 2 24.04 31.72 26.540000000000003 17.7 644 2 24.04 31.72 26.540000000000003 17.7
645 3 21.58 28.860000000000003 29.42 20.14 645 3 21.58 28.860000000000003 29.42 20.14
646 4 21.58 28.28 28.9 21.240000000000002 646 4 21.58 28.28 28.9 21.240000000000002
884 #Sequence Count Percentage Possible Source 884 #Sequence Count Percentage Possible Source
885 CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (96% over 33bp) 885 CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (96% over 33bp)
886 CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp) 886 CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp)
887 >>END_MODULE 887 >>END_MODULE
888 >>Adapter Content pass 888 >>Adapter Content pass
889 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 889 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter
890 1 0.0 0.0 0.0 0.0 890 1 0.0 0.0 0.0 0.0 0.0
891 2 0.02 0.0 0.0 0.0 891 2 0.02 0.0 0.0 0.0 0.0
892 3 0.02 0.0 0.0 0.0 892 3 0.02 0.0 0.0 0.0 0.0
893 4 0.02 0.0 0.0 0.0 893 4 0.02 0.0 0.0 0.0 0.0
894 5 0.02 0.0 0.0 0.0 894 5 0.02 0.0 0.0 0.0 0.0
895 6 0.02 0.0 0.0 0.0 895 6 0.02 0.0 0.0 0.0 0.0
896 7 0.02 0.0 0.0 0.0 896 7 0.02 0.0 0.0 0.0 0.0
897 8 0.02 0.0 0.0 0.0 897 8 0.02 0.0 0.0 0.0 0.0
898 9 0.02 0.0 0.0 0.0 898 9 0.02 0.0 0.0 0.0 0.0
899 10 0.02 0.0 0.0 0.0 899 10 0.02 0.0 0.0 0.0 0.0
900 11 0.02 0.0 0.0 0.0 900 11 0.02 0.0 0.0 0.0 0.0
901 12 0.02 0.0 0.0 0.0 901 12 0.02 0.0 0.0 0.0 0.0
902 13 0.02 0.0 0.0 0.0 902 13 0.02 0.0 0.0 0.0 0.0
903 14 0.02 0.0 0.0 0.0 903 14 0.02 0.0 0.0 0.0 0.0
904 15 0.02 0.0 0.0 0.0 904 15 0.02 0.0 0.0 0.0 0.0
905 16 0.02 0.0 0.0 0.0 905 16 0.02 0.0 0.0 0.0 0.0
906 17 0.02 0.0 0.0 0.0 906 17 0.02 0.0 0.0 0.0 0.0
907 18 0.02 0.0 0.0 0.0 907 18 0.02 0.0 0.0 0.0 0.0
908 19 0.06 0.0 0.0 0.0 908 19 0.06 0.0 0.0 0.0 0.0
909 20 0.36 0.0 0.0 0.0 909 20 0.36 0.0 0.0 0.0 0.0
910 21 0.36 0.0 0.0 0.0 910 21 0.36 0.0 0.0 0.0 0.0
911 22 0.36 0.0 0.0 0.0 911 22 0.36 0.0 0.0 0.0 0.0
912 23 0.36 0.0 0.0 0.0 912 23 0.36 0.0 0.0 0.0 0.0
913 24 0.36 0.0 0.0 0.0 913 24 0.36 0.0 0.0 0.0 0.0
914 25 0.4 0.0 0.0 0.0 914 25 0.4 0.0 0.0 0.0 0.0
915 26 0.4 0.0 0.0 0.0 915 26 0.4 0.0 0.0 0.0 0.0
916 27 0.42 0.0 0.0 0.0 916 27 0.42 0.0 0.0 0.0 0.0
917 28 0.62 0.0 0.0 0.0 917 28 0.62 0.0 0.0 0.0 0.0
918 29 0.66 0.0 0.0 0.0 918 29 0.66 0.0 0.0 0.0 0.0
919 30 0.68 0.0 0.0 0.0 919 30 0.68 0.0 0.0 0.0 0.0
920 31 0.68 0.0 0.0 0.0 920 31 0.68 0.0 0.0 0.0 0.0
921 32 0.68 0.0 0.0 0.0 921 32 0.68 0.0 0.0 0.0 0.0
922 33 0.68 0.0 0.0 0.0 922 33 0.68 0.0 0.0 0.0 0.0
923 34 0.7 0.0 0.0 0.0 923 34 0.7 0.0 0.0 0.0 0.0
924 35 0.76 0.0 0.0 0.0 924 35 0.76 0.0 0.0 0.0 0.0
925 36 0.8 0.0 0.0 0.0 925 36 0.8 0.0 0.0 0.0 0.0
926 37 0.88 0.0 0.0 0.0 926 37 0.88 0.0 0.0 0.0 0.0
927 38 1.0 0.0 0.0 0.0 927 38 1.0 0.0 0.0 0.0 0.0
928 39 1.12 0.0 0.0 0.0 928 39 1.12 0.0 0.0 0.0 0.0
929 40 1.22 0.0 0.0 0.0 929 40 1.22 0.0 0.0 0.0 0.0
930 41 1.38 0.0 0.0 0.0 930 41 1.38 0.0 0.0 0.0 0.0
931 42 1.48 0.0 0.0 0.0 931 42 1.48 0.0 0.0 0.0 0.0
932 >>END_MODULE 932 >>END_MODULE
933 >>Kmer Content pass 933 >>Kmer Content pass
934 >>END_MODULE 934 >>END_MODULE