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changeset 8:744add24f472 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_trimmer commit a5766d27dcddd1891766476a913d0eae1ec7a3c9
author iuc
date Sun, 23 Nov 2025 17:49:44 +0000
parents 9e095a36386c
children
files fastq_trimmer.xml macros.xml
diffstat 2 files changed, 34 insertions(+), 24 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_trimmer.xml	Fri Oct 04 10:34:02 2024 +0000
+++ b/fastq_trimmer.xml	Sun Nov 23 17:49:44 2025 +0000
@@ -38,44 +38,54 @@
         <test>
             <!-- Do nothing trim -->
             <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
-            <param name="base_offset_type" value="offsets_absolute"/>
-            <param name="left_column_offset" value="0"/>
-            <param name="right_column_offset" value="0"/>
-            <param name="keep_zero_length" value="keep_zero_length" />
+            <conditional name="offset_type">
+                <param name="base_offset_type" value="offsets_absolute"/>
+                <param name="left_column_offset" value="0"/>
+                <param name="right_column_offset" value="0"/>
+            </conditional>
+            <param name="keep_zero_length" value="true" />
             <output name="output_file" file="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
         </test>
         <!-- Trim to empty File -->
         <test>
             <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
-            <param name="base_offset_type" value="offsets_absolute"/>
-            <param name="left_column_offset" value="30"/>
-            <param name="right_column_offset" value="64"/>
-            <param name="keep_zero_length" value="exclude_zero_length" />
+            <conditional name="offset_type">
+                <param name="base_offset_type" value="offsets_absolute"/>
+                <param name="left_column_offset" value="30"/>
+                <param name="right_column_offset" value="64"/>
+            </conditional>
+            <param name="keep_zero_length" value="false" />
             <output name="output_file" file="empty_file.dat" ftype="fastqsanger" />
         </test>
         <test>
             <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
-            <param name="base_offset_type" value="offsets_percent"/>
-            <param name="left_column_offset" value="50"/>
-            <param name="right_column_offset" value="50"/>
-            <param name="keep_zero_length" value="exclude_zero_length" />
+            <conditional name="offset_type">
+                <param name="base_offset_type" value="offsets_percent"/>
+                <param name="left_column_offset" value="50"/>
+                <param name="right_column_offset" value="50"/>
+            </conditional>
+            <param name="keep_zero_length" value="false" />
             <output name="output_file" file="empty_file.dat" ftype="fastqsanger" />
         </test>
         <!-- Trim to 4 inner-most bases -->
         <test>
             <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
-            <param name="base_offset_type" value="offsets_absolute"/>
-            <param name="left_column_offset" value="45"/>
-            <param name="right_column_offset" value="45"/>
-            <param name="keep_zero_length" value="exclude_zero_length" />
+            <conditional name="offset_type">
+                <param name="base_offset_type" value="offsets_absolute"/>
+                <param name="left_column_offset" value="45"/>
+                <param name="right_column_offset" value="45"/>            
+            </conditional>
+            <param name="keep_zero_length" value="false" />
             <output name="output_file" file="fastq_trimmer_out1.fastqsanger" ftype="fastqsanger" />
         </test>
         <test>
             <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
-            <param name="base_offset_type" value="offsets_percent"/>
-            <param name="left_column_offset" value="47.87"/>
-            <param name="right_column_offset" value="47.87"/>
-            <param name="keep_zero_length" value="exclude_zero_length" />
+            <conditional name="offset_type">
+                <param name="base_offset_type" value="offsets_percent"/>
+                <param name="left_column_offset" value="47.87"/>
+                <param name="right_column_offset" value="47.87"/>
+            </conditional>
+            <param name="keep_zero_length" value="false" />
             <output name="output_file" file="fastq_trimmer_out1.fastqsanger" ftype="fastqsanger" />
         </test>
     </tests>
--- a/macros.xml	Fri Oct 04 10:34:02 2024 +0000
+++ b/macros.xml	Sun Nov 23 17:49:44 2025 +0000
@@ -1,11 +1,11 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.1.5</token>
-    <token name="@VERSION_SUFFIX@">2</token>
-    <token name="@PROFILE@">23.1</token>
+    <token name="@TOOL_VERSION@">1.2</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">24.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement>
             <yield/>
         </requirements>
-    </xml>>
+    </xml>
 </macros>