Mercurial > repos > devteam > data_manager_twobit_builder

comparison data_manager/twobit_builder.xml @ 7:94bffa4fdedc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 18d696a933873372ae5c77257fd31eaf2cd4ed13
author iuc
date Sun, 16 Apr 2023 08:15:04 +0000
parents b640d79b49cb
children 4a7740ee2892
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6:b640d79b49cb 7:94bffa4fdedc
1 <tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.4" profile="19.05"> 1 <tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.5" profile="19.05">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="377">ucsc-fatotwobit</requirement> 3 <requirement type="package" version="377">ucsc-fatotwobit</requirement>
4 <requirement type="package" version="3.7">python</requirement> 4 <requirement type="package" version="3.7">python</requirement>
5 </requirements> 5 </requirements>
6 <description>builder</description> 6 <description>builder</description>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 python '$__tool_directory__/twobit_builder.py' 8 python '$__tool_directory__/twobit_builder.py'
9 '${out_file}' 9 '${out_file}'
10 $long
10 --fasta_filename '${all_fasta_source.fields.path}' 11 --fasta_filename '${all_fasta_source.fields.path}'
11 --fasta_dbkey '${all_fasta_source.fields.dbkey}' 12 --fasta_dbkey '${all_fasta_source.fields.dbkey}'
12 --fasta_description '${all_fasta_source.fields.name}' 13 --fasta_description '${all_fasta_source.fields.name}'
13 ]]></command> 14 ]]></command>
14 <inputs> 15 <inputs>
15 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> 16 <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
16 <options from_data_table="all_fasta"/> 17 <options from_data_table="all_fasta"/>
17 </param> 18 </param>
18 <param name="sequence_name" type="text" value="" label="Name of sequence" /> 19 <param name="sequence_name" type="text" value="" label="Name of sequence" />
19 <param name="sequence_id" type="text" value="" label="ID for sequence" /> 20 <param name="sequence_id" type="text" value="" label="ID for sequence" />
21 <param argument="--long" type="boolean" truevalue="--long" falsevalue="" label="Use the -long option for very big genomes." />
20 </inputs> 22 </inputs>
21 <outputs> 23 <outputs>
22 <data name="out_file" format="data_manager_json"/> 24 <data name="out_file" format="data_manager_json"/>
23 </outputs> 25 </outputs>
24 26