Mercurial > repos > devteam > data_manager_bowtie2_index_builder

diff data_manager_conf.xml @ 2:8de13c28d92e draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 10:17:27 -0400
parents eec64de5f7fb
children 49331eedb1c5
line wrap: on
line diff
--- a/data_manager_conf.xml	Thu Mar 19 10:24:37 2015 -0400
+++ b/data_manager_conf.xml	Tue Oct 13 10:17:27 2015 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <data_managers>
 
-    <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.1">
+    <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2">
         <data_table name="bowtie2_indexes">
             <output>
                 <column name="value" />
@@ -17,6 +17,19 @@
                 </column>
             </output>
         </data_table>
+
+        <data_table name="tophat2_indexes">
+            <output>
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="path" output_ref="out_file" >
+                    <!-- no move, always happens as part of bowtie2 and uses that path -->
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
     </data_manager>
-   
+
 </data_managers>