Mercurial > repos > devteam > data_manager_bowtie2_index_builder

comparison data_manager_conf.xml @ 2:8de13c28d92e draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 10:17:27 -0400
parents eec64de5f7fb
children 49331eedb1c5
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1:e0839cffd009 2:8de13c28d92e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 3
4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.1"> 4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2">
5 <data_table name="bowtie2_indexes"> 5 <data_table name="bowtie2_indexes">
6 <output> 6 <output>
7 <column name="value" /> 7 <column name="value" />
8 <column name="dbkey" /> 8 <column name="dbkey" />
9 <column name="name" /> 9 <column name="name" />
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation> 16 <value_translation type="function">abspath</value_translation>
17 </column> 17 </column>
18 </output> 18 </output>
19 </data_table> 19 </data_table>
20
21 <data_table name="tophat2_indexes">
22 <output>
23 <column name="value" />
24 <column name="dbkey" />
25 <column name="name" />
26 <column name="path" output_ref="out_file" >
27 <!-- no move, always happens as part of bowtie2 and uses that path -->
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
20 </data_manager> 33 </data_manager>
21 34
22 </data_managers> 35 </data_managers>