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diff bwa_macros.xml @ 11:6def3ba376a7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
author iuc
date Tue, 10 Apr 2018 18:40:10 -0400
parents 29299da15326
children ceed4b724f0b
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--- a/bwa_macros.xml	Thu Feb 01 12:35:18 2018 -0500
+++ b/bwa_macros.xml	Tue Apr 10 18:40:10 2018 -0400
@@ -3,6 +3,8 @@
 
     <token name="@VERSION@">0.7.17</token>
 
+    <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>
+
     <token name="@set_rg_string@">
         #set $rg_string = "@RG\\tID:" + str($rg_id)
         #set $rg_string += $format_read_group("\\tSM:", $rg_sm)