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comparison bwa_macros.xml @ 11:6def3ba376a7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
author iuc
date Tue, 10 Apr 2018 18:40:10 -0400
parents 29299da15326
children ceed4b724f0b
comparison
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10:29299da15326 11:6def3ba376a7
1 <macros> 1 <macros>
2 <import>read_group_macros.xml</import> 2 <import>read_group_macros.xml</import>
3 3
4 <token name="@VERSION@">0.7.17</token> 4 <token name="@VERSION@">0.7.17</token>
5
6 <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>
5 7
6 <token name="@set_rg_string@"> 8 <token name="@set_rg_string@">
7 #set $rg_string = "@RG\\tID:" + str($rg_id) 9 #set $rg_string = "@RG\\tID:" + str($rg_id)
8 #set $rg_string += $format_read_group("\\tSM:", $rg_sm) 10 #set $rg_string += $format_read_group("\\tSM:", $rg_sm)
9 #set $rg_string += $format_read_group("\\tPL:", $rg_pl) 11 #set $rg_string += $format_read_group("\\tPL:", $rg_pl)