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changeset 10:7c1c8e2c6f02 draft

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Deleted selected files
author dcorreia
date Fri, 22 Apr 2016 08:28:57 -0400
parents 298be0f4b9a7
children c725abb5ecd3
files fasta2phylip/test.fasta fasta2phylip/test.phy fasta2phylip/tool_dependencies.xml
diffstat 3 files changed, 0 insertions(+), 367 deletions(-) [+]
line wrap: on
line diff
--- a/fasta2phylip/test.fasta	Fri Apr 22 08:24:30 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,210 +0,0 @@
->ARATH
-----MPSPSAVADLLAALAYRLQNGDELF---EEEEEAEESTSSMGLAISELNRSLTLDI
-GC----EDSGVRVVDAALSIMCFKAPQ---------VFDSAIEFMVRTIVCALSSSSNCK
-VIRYR---NEETLQFGSSNLPGCSEELIEISKDIIEKLWGNGRLA--TLLFEAVV----R
--SAASTCKISS-----FNAHGK----LMDGRNRAVSKLLAYLPGESSIENHKIPLRILFW
-YRDPLSLKVDVSRILKEVVERPFLCVKRELFERGEWRDIVICLAISPTMFINTRSLLHKW
-LLLTGLASVFEVLAGLASAIMDTISRPSLWGIPMELASMLPFSDTYFPFQCQ-FLRILAG
-PLSSKSLLMLAHTVSKASAVPGQQQRDTNCKPTPIKVQALDDK---------TEWALAIN
-FPDWFYFASAMLFSEGK-SFENIHHICASKVADCRQVCDVEDL--SIAAATYISWILNPG
-SGTIQESVSKSLIRVSEICISKSCGS---------EAYRTETITGKRK--KPDR------
-LVSGKINASSIVEDLLREFENNIT---NSVSYDLDSRKTHPSFSSGLQNNLLVRRVVVGV
-LFGSPYSVTDEEYELVLHYAATGKILDFKKSRSTGFKQGKKFSRISA----LLSNEITKE
-EATEGTLLVFNLTDTLESMCVSSFEAKEDAEKFINHFKLRSSKYLVKCIDRLIQLHCT--
-----QDGDPILSDINIRLLQWTVKGLEDPHFNKVLDDIAAKLACIFSRV-----------
--
->ORYSA
-MASPPSPLEAIARLLADLARRRSHPPPGG-------GR--SGDSLAASVSSLAAALNPHG
-GGASSSSSSGTRVLDAVLSLMCFDPME---------VDRARVDCLVRTTVSALSASVSCR
-VDHID---GAEMLTVGSSVAPGDCRELVHSCAALLEKLGDPDVADHSYDLLYAVV----K
--AALLSPRYLCLF---PLPYYREDEDSTCDMGTISSVLTRHPTYQVLPNDYTIPL-----
-------------------------------------------------------------
----RGLGAVLELQTAVVSSVLDVLFEPMAWGISMELGQKLPFSYDYFPHQHVDLLAILTG
-PLSCRKFVDLTSYIDSQS------------------------HASKGSVKYNSSWSMIVN
-FPLWFNFATALLFHREG-SHGYL-SEALSMEIISESIRDVNL---AHRAAMYLSWVLCPS
-NEDQRQILAGNILELSHSWARNNKKGPSH-------VHHTSTVNHRRKLRIPTVGDTEKL
-HLSTNPVSSL-----IKEFDDRCVKFCSKTANSQVQDEELSDL--PIHFNFLHLWIPLGI
-LLVSSSFVNDQDCDMLLHYSSTGQVLESNEVQRKTKDHICNDSFS-----AS-CKGFTET
-WASAGASLVFRWLDLIINMSAVIFEREDICDHFVSQLKSKTNPYLLKCLYSLLEVL----
--DEASQ-RDFLVDLHDRLLNWNKKGQ-SFDGFEAFEDIILRMNKKFHFRT----------
--
->SORBI
----MAPPLEDLTRVLAELAARLSQPPAGG-------GSSSSGDSLSASISSLAAALNPSP
-DGGNS-ASSGTRVLDAALSLMCFDPLE---------VNSARVDCLVRTLVSVLSASVSCR
-VVRPDGDAGEEMLCVGSSLSPVDCQELLQSCATLVEKLRDCDDGRHSYDLLYAVA----K
--TVVLSPHYQCLF---PLPYYKEEGERVSHMGTIAAELIKHPSNLVLPSDHSIPPRLLLW
-HLDPSIIRHDLSAILQEMRSLLHFW-----------------------------------
-FLATGLGSVLELHNALVSSALDILLKPMSWGICIELGQRFPFSHAYFPNQQSDLLAILTG
-PLSCKGFLDLVSYISALVH-LDNSR----TRCSSQKNL--QLQPSKGLVNYNSAWCMIIN
-FPVWFSFATALLFYREG-SQDYL-SETLSKEITVESISDVSL---VQRAAFYLSWVLCPS
-NDDQCEVLSNNILEISRSWARNNKRCL----------GYQSTVNHRRKLRIPTAASSEKF
-HVPINTVSSL-----VKEFDDHCVKCCRTTAFPQVQVGKLLDLH-PSYFNLLHQWIPLGV
-LLASPSYINEQNCDILLRYTSTGQVLGSNEAQIQTKDHASNDGFL-----GS-CIGTAKR
-WPLIGPYLIFGWLDVVEDMSSLIFDCEDKCHRFVSQLRNKTGPYMLKCVKSLFKVL----
--EQANQDKDLVIDLHNRLLNWNKNGQ-G---CEIFGDVILEMNKRFNLPV----------
--
->VITVI
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
---------------------------------------------------MIFFFRLLLW
-YLDPLILKHDVSKILQDTMKRPFLCLNKEFHERMDWRSIIICLVLSPTMFVETRALLHNW
-FLITGLASVLQLLIEVVSMILDVVSRPTGWGISVEMGSKLPFSIAYFPYNHH-VYRILSG
-TLSSESFLHLVSIINVPIS-RAGNHSMPTIKQVPMKISTIGHK---------SVWAAAMN
-FPDWFFFASVLLFSEKS-FQDNFYSKCGIGVPRTEKRHDVEPLCFSSAAARYIAWILSPA
-DKSHQDLLVDWLTKLSESWTLKQFGS---------DTYNKEIADYRKKLKKTKFPVYKGD
-YNLPKEYNYVTIVLWLKEFQNSYTKNQYKTASSLAFCEHNLSYSLRFQHSVLFRRIPLGI
-LIGCPYYLDESGCEMLLHYSATGTIPLLRETHSGALKHLKLDSEGQKDSIMWTEEY-TKE
-EAAAGASLVFRLTDVVLSMAASLFETDESGLEFICQVKVKAGRYLIKCIKKLLQFND---
--------GIMLMDLFNRLVQWRNQGQEVFQGCTDLDDVINGLGLKLSSL-----------
--
->BRADI
----MAPPLDGLTKLLAEVASRLSRPPGVIGAGPSS-SSSSSGDSLSASISSLAAALNPRP
-AA----AATGTRVLDAALSLMCFDPLEAIPIPFGSRVDRARVECLVRTITSALSASVSCR
-VVRTD-DCGGEMLCVGSSVSPGDCRELVSLCASLVEKLGDRDDAMRGNAVTIKQTYGTPE
-IHDTQDVLGVCLF---PLPYYRENGEKKYEMATVAVDLTRHPSYQVIPSDGSIPLRVLLW
-HLDPSILKHDLSAMLHEAITRPFLC-----------------------------------
-L-------------------RKELHDRIAWRVIIICLVCFPPAFLEMTSLFH--------
--------------------------------------------------SWFLATSTITN
-FPIWFSFAAALLFHREG-FQGYL-SEILSEEKVSESISDISL---ARRAAFYLSWVLCPS
-NEDECQMLANNMVELSNSWARNIKSRPSY-------AYHTSTVNHRRRLRIPTVGDTEKL
-HMSTNPVSSL-----IQEFDNRCVNFCNQTAVSQVQD-ELSGFP-PSCISFLHLQIPLGV
-LLVSSSCVKDHDHDVLLHYASSGLILEADKVQTKTKDHVGNHGFS-----AS-RRGFTER
-WALSGACVIFSWFDVIDDMSAVIFECEDTCQHFVSELRTKTSPYLINCVNL---VL----
--NEAGQDKDSVIDLHDRLLDWNNKLK-SFDGCEAFKDVILQLKKKVLLPS----------
--
->CARPA
-----MTTLPEIADLFSRLASNLQTLKPKSIVDEGK-----EEVSLNLSISKLNQSLNLC-
-------KDSSVRVLDTLLSLMCFKAPQ---------VFGSTIDYLVKTIVTVLHSSVSCE
-VLMFE---NEETLQIGSSILPRDCLKLIEMCNAVIQKLEGHEVLA--SSLLHAVV----R
--VAVSTSFCQFSFQFPPTLEEK----EVDERSVAFSKLHCHLPRECSLQNHEIPLRLLFW
-YLDPASLQHDISKILQDAVTMPFLCLSNEFHKRMDWRNLVICLALSPVMFIETRALLHNW
-FLMTGFAFILEFLVALISVILDLLSRPTWWGIPMDLGFKLPLSDAYFPCQSH-LLRTLAG
-PLFSEKFVHLVHVIGSPIS-GARKQSASSFKRTGIKLATINQN---------SLWALAVN
-FPDWFYFASILLFSGKS-FQDHFQPKCMIGAPKNRGPHDSVLL--SQAAARYIAWVMSPL
-NKSNQDLLVGCLIKISEAWTRQQFGP---------GVHDKKALGCDKL-KKHKF-HGSKD
-YNLTKVGNSKMIDLWLREFQSTYLDFAKEAFYGSASRETNASCGHSLHEDLLVRGIPLGV
-LVGCPNSITDDGCELLLHYAATGRIGLMESKFSG-SKHAEQISEFKEGSNTQAGMCNTKR
-EAIAGACLAFRLTDIVQSMSASFFENQEIGQEYIYQVKLKASKYLIKCIKRLIQLGVD--
-----EDGPMLLMGLHDRLLQWRHQGKEVIEVNKDLDDITSDLSHKLSLL-----------
--
->RICCO
-----MATLEEITDLFSKLAFHLQTLSHASSP------KD-SNSFIDLSISKLNQSLNII-
-------DNTQTRVLDTALSLMCFRAPQ---------VFDSTIEYLVKTIVSVLSSSIRCN
-VLRLE---KEEVLQIGSAISKKSFLEFIQVVNDVVSKLEENGMPC--HLLLCAFA----R
--VAVSASCYRYLVPTMHVLDTK----SINGKSSALSKLLCSLPKD-SLNNHEIPPRLLSW
-YLDPLALKHNISNILQVTMERPFLLSSKEFYDRMEWRSILMCLVLSPTMFIHTKALLHNW
-FMLTGLGSILELLIELVALILDVISRPTWWGMSMELGSKLPYANAYFPYKNH-LLRILVG
-PLSSISFLQLVYRTTESVS-HIMEQFGRTCKASVLKIASTESK---------SIWALAIC
-FPDWFYFASVLLFSTNC-FQKSHQSKRIFGVPKSGKTNNKEQSPPAAAAARYIAWILSPN
-NQSQQDWLFGGLTKISEFWTLRQIDL---------GTSGRDIASCRKKLKNSKCYNIEED
-FSLGTEDNCQTIGLWLKEFQSIM-KHGNESVNNLYSCEAN-SYVFAFENHMFFRRIPLGI
-LIGFPSYVNEDGFELLLHYAATGRMLPL-TTKNDRKDHLEKKSMGLEDLGL--G-SNSKK
-EAVAGACLVFSLSDTVERISASLFENEKSGLDAISQVKLRAGRYLIKCLKSLIQLNIA--
-----EDGHATQMDLHDRLERWRHQGQEMLNIDKDLDDAIKALSNELLPS-----------
--
->POPTR
-MRTTSPTSPEIMELFSKLAFELQTLTHNSPINQEQQQQEFNDSSIDPSISKLT--LSLT-
-------HNPGVRVLDTALSLMCFKAPQ---------VLDSVVEYSVKTIVSVLSSSICCE
-VFRFH---NEEVLQIGSFISRGHCMELIECVFDVISKLKEHGMPI--DLLLSAVV----R
--VAASASCYKYLSPSMRVLDVK----SIDGSITAISKLLCHLPMDFSLSNHEIPTRLLIW
-YLDPLALKHDISKILQETIKRPFLCLSMEFYERMDWRSILVCLVLSPIMFIDTRALLHDW
-FLQTGLSSVVELLMELVSLILDVISRPTWWGLSLELGLKLPFSNAYFPYKSD-FLRTLTG
-PFSYESFLQLVHMTRKSAY-LHRELCDPTIKPSAVRVASIDHK---------SIWALAIS
-FPDWFYFASVLLFSDDKNSQQNIQVKCPLGVPEFGQ------LPASAAAATFIAWILSPV
-NKSNQDALFENLTKLSKCWNLKEISS---------DNSQNGMAGYKKKLKKPRFCDSKED
-STLGNKYDCQVIILWLKQFQNIM-KHN-ETIDELAFCEAK-SYALLPQHDKLFRRIPLGI
-LTGSSGYINENGCELLLHYAATGRILDSLGTENTSLKHINYNSSGPEDL-F--G-GINKE
-EAVLGACLVFSLTDVVDRMSVSLFETEKTGEDFLCLVKLRAGRYLLKCIKRLTHFNVD--
-----EDGVPMLLDLQGRLERWRHQGKEVPEFHKDLDDALKGLSTESS-------------
--
->MUSAC
----MATSPAEIARLFAELASRIQSPQDDTDGGDGV-G---PGGELASAISSLAASLSFG-
-------DAPRVGVLNAALSLMCFRASE---------VHRARVECLVGTIVAMLSSSVSCR
-VLRLPDKRDEGFLRIGTSFSSEDCVQLIRVCVDVLASLKGHCGDL--HALLYAVV----K
--AVISSSTYQGLLPSLPIGYLRN-EDTDCGVQTEISKLAYSLSDQTSCTGHEFPLRLQFW
-YLDPLILKHDISEILKEVIRRPFLCLRKELHDRMSWRNIITCLVTSPTFFKETKATLHTW
-FLFTGLTSVLDLKIGIVLSVLDILSRPMWWGVPVELGLRFPSSYAYFSIRHHDLLTILTG
-QLSCKNLLHLVQYIKTEVA-ILSNIC-QSASHPSVTNY--NHEGLA----------NVID
-FPAWFYFANALIFYRNS-SQDYL-SEALCGRLRTEPVNDLEL---HRAALYYISWVLCPI
-GEAHRDMLAENIDELSRSFVTQHKAKSIYEERSFSDMHPKNVLSRSKKLKIPKANSFEKH
-RMAPQEVSSLNIGVWLENFNAIHIEVCNENTASNVQSAVTSEQDANMKPNLLLARVPLGI
-LLVSPSYLDELGCEILLHYAATGETMLAKEI-RKLKDHYGYSDLG-----VL-FHSDPSK
-WALKGACLVFNLLDVIEDMSIMLFDSEDNRIGFVNQMKGKAGRFLIRCLRMLLNHQEIE-
--IDGVAVGDMMLDVHHRLLKWNKLGLGMFEGYKEFDDFVECFLTFLILSFEDETLTTVLE
-S
->THECC
-----MATPQSITDLFARLAFHLQL----PISEREN-----EEEALNLAISKLNQSLNLNE
--N----HDSRVRVMDTALSLMCFKAPQ---------VFDSVIEYLVKTIVSVLSSSVNCK
-VFLLQ---NQEFLLIGSASLGQNSVELVEMCNNVYAQLEGKGVFS--HLLLRAVV----R
--GTVLASRYQYSYPFVPILDVK----SIEGRSAAVSKLHCHLPTELSLENEELPLRLLFW
-YLDPLILKQAISKILEDTTGRPFICLSEEFHQRIDWRSIIICLVLSPVMFIETRALLHSW
-FLKTGLASVLQLLVGLVSAVLDVISRPTWWGISMELGSKLPFSCAYFPNKNH-LLRILAG
-TFSAENFLHLVHATSELVS-LGKEQLHPAVKPKSMDVTSIDHK---------SLWALAVD
-FPDWFYFASCLLFPENS-LRKEFHLKCTFAASKVGETHDKELL--SISAARYISWILSPV
-SKSNQDLLVDFLTKISESWALKQYDS---------VMHNKEAAACKKKCKKPKLYDKREH
-YSLANEYDCQKMGIWLNEIENIYLQYANKTVNSSASADSNASH-GSTQQNVLLRRIPLGI
-LIGCPNCITEDACALLLHYAATGNILRPRETVTSGLRHVKQKSER-QDLTIWMGKC-SKR
-DVLAGACLVFTLTDAVDSISASLFDTEDSELEYIYQVKVKAGKYLMKCIKRLSQLNID--
-----KDEVLTLRDLRSRLGRWRHQGQETLQVQNDIDDVINDLSQKLSSL-----------
--
->MANES
-----MATLGEITDLFCKLAFHLQTLTHTAQMHYQDEETE-HSDSVDLSISSITQSLNLN-
-------DNAGVRVLDTALSLMCFTAPQ---------VFDSMIEYFVKTIVSVLSTSISCK
-VLPFG---KEEILRVGSCISQRDCVEFIEVVNDVVSKLDQHGVPS--HLLLRSAA----R
--VAVSTSCCRYMVPSMHVLDVK----SIDRRSTAISNLLSHLPGDLSLDNNKLPLRLLSW
-YLDPLTLKHDISNILQETMKRPFLTLSKEFYERMEWRSILLCLVLSPMMFIHTRALLHDW
-FMLTDLGSVLEFLIELVAVILDVISRPTWWGIPLELASELPFSNAYFPCKDH-LLRILSG
-PLVSSSFQQLVQVTSESDS-LVCKQFGPISKSSTLKFASVDRK---------SIWALVIC
-FPDWFYFASGLLFSNNC-YQNNCQLNCLLEAPNS------IMEQPAVSAASFIAWILSPN
-SKPHQDLLFEGLTRMSECWSRKQIDS---------DVH----------------------
----ENEYGCQVIGLWLNEFHRVM-KYGVESTDKSSNCEAE-SYYFVLQNSMLFRRITLGV
-LIGCPSYVKEDGFELLLHYAATGRVLHL-TSNNARMKHVDE---------------FNRK
-EAVAGACLIFSLTDIVERISASSFENEKSGLDIICQVKLGASKYLIKCMKKLIEPNIF--
-----EDNK-MLVDLHDRLERWRHQGQEMLELDKDLDDTIKGLSNELLLL-----------
--
->MALDO
-----MTXLPEITDLFARLAIHLKIPNDTSFPPRTS-KEDLDDAALDLSISELNQSLNPN-
-------GDSRVRVLDTVLSLMCFKAPQ---------VFDSEIEYLVNTIAAVLLSSVRCK
-VFRYP---KGEILLIGSSISQXDCGHLIEACADVLEKLEGHGKLS--DSILCAIV----R
--VASSASFYR--HQLMPVLGVK----SVDAKNTMISKLLCHLPREKFLENNKIPLRLLLW
-YLDPLILKRDISNILQETMERPFLCLSRKFHESNDWRSIITLLVLSPFMFVEARALLHRW
-FLVTGLASVLELLIQLVSTTLDVVSRPMFWGISAEVGAKLPFLNAYFPYNQP-LLRTLVG
-PLSYDGLLQLVHNTKDXVP-FAQKQLYPTFKPPTVKMASTPSPFYNPTDPQMLHRSLAIN
-FPDWFYLASALLFSEKS-THDSCHPECXLAASKVGKTHEELP---YVAAARYIAWILSPL
-XKSHHASLXDCLIKXSXSLALKQFGS---------GSHDKEIHGYKKKLKKPKLCEE---
--------ESASIAVWLNGFSNIYTRYCNETSET------KPSCGLNLQKNVLFRRIPLGI
-LLSCPHRINEDECELLLHYAATGRIFQLRETKTTGLKHVKWSSKWHTNSTAWGDEC-NEK
-EASAGACLVFSLTDIIESMSASLFETEDAGADFICRVKMQVSKYLIKCIKRLIQLKID--
-----NG-NWEVMDLRRRLENWRHQGQEVPELNKDLDDEWGKDYAKQQFFGTEPRCIRLAS
-F
->ZEAMA
----MAPPLEDLTRVLAELASGLAQPPAGG-------GTFSSTDSLPASISSLAAALNPSG
-DGA-A-ASSGTGVLDAALSLMCFDPLE---------VNSARVNCLVRTLVSVLSASVSCC
-VVRPDGDAAEEMLCVGSSVSPLDCRELLRSCAALVEKLGDCGDRRHSYDLLYAVV----K
--TILLSPHYQCLS---PLPYYKEEEERVSHMGTIAAELINHSSDHILPSDHSIPPRLLSW
-HLDPLILRHDLSAMLQEVIRRPLLC-----------------------------------
-L-------------------RKELYNRMEWRIIIICLVCCPTIFMEM-------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--
->PHODA
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------MWWGISMEMGMKYPSSYAYFPCRHHELLAIISG
-HISCNSFLDLVHYIKTRLA-PLAKHSDPTASHPSHGIF--GHEALVDLVDNDSAWTMLMD
-FPAWFYFATALIFHGND-SQDYI-SSVICGEVKTETVKEMQR---KAK------------
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------GCIGHDEFT-----PW-SADDATK
-WALNGACLVFNLLDLIEDMSVMLFDCEDTRVDFLHQMKGKASGYLLKCVKLLFECECHEF
-YNGAIGVRDNVLDLYRRLVTWRQQGPEGFEGYKAFDDVVDDFAKRFRIVE----------
--
--- a/fasta2phylip/test.phy	Fri Apr 22 08:24:30 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,151 +0,0 @@
-14 781
-ARATH ----MPSPSAVADLLAALAYRLQNGDELF---EEEEEAEESTSSMGLAISELNRSLTLDIGC----EDSGVRVV
-ORYSA MASPPSPLEAIARLLADLARRRSHPPPGG-------GR--SGDSLAASVSSLAAALNPHGGGASSSSSSGTRVL
-SORBI ---MAPPLEDLTRVLAELAARLSQPPAGG-------GSSSSGDSLSASISSLAAALNPSPDGGNS-ASSGTRVL
-VITVI --------------------------------------------------------------------------
-BRADI ---MAPPLDGLTKLLAEVASRLSRPPGVIGAGPSS-SSSSSGDSLSASISSLAAALNPRPAA----AATGTRVL
-CARPA ----MTTLPEIADLFSRLASNLQTLKPKSIVDEGK-----EEVSLNLSISKLNQSLNLC-------KDSSVRVL
-RICCO ----MATLEEITDLFSKLAFHLQTLSHASSP------KD-SNSFIDLSISKLNQSLNII-------DNTQTRVL
-POPTR MRTTSPTSPEIMELFSKLAFELQTLTHNSPINQEQQQQEFNDSSIDPSISKLT--LSLT-------HNPGVRVL
-MUSAC ---MATSPAEIARLFAELASRIQSPQDDTDGGDGV-G---PGGELASAISSLAASLSFG-------DAPRVGVL
-THECC ----MATPQSITDLFARLAFHLQL----PISEREN-----EEEALNLAISKLNQSLNLNE-N----HDSRVRVM
-MANES ----MATLGEITDLFCKLAFHLQTLTHTAQMHYQDEETE-HSDSVDLSISSITQSLNLN-------DNAGVRVL
-MALDO ----MTXLPEITDLFARLAIHLKIPNDTSFPPRTS-KEDLDDAALDLSISELNQSLNPN-------GDSRVRVL
-ZEAMA ---MAPPLEDLTRVLAELASGLAQPPAGG-------GTFSSTDSLPASISSLAAALNPSGDGA-A-ASSGTGVL
-PHODA --------------------------------------------------------------------------
-
-DAALSIMCFKAPQ---------VFDSAIEFMVRTIVCALSSSSNCKVIRYR---NEETLQFGSSNLPGCSEELIEISKDI
-DAVLSLMCFDPME---------VDRARVDCLVRTTVSALSASVSCRVDHID---GAEMLTVGSSVAPGDCRELVHSCAAL
-DAALSLMCFDPLE---------VNSARVDCLVRTLVSVLSASVSCRVVRPDGDAGEEMLCVGSSLSPVDCQELLQSCATL
---------------------------------------------------------------------------------
-DAALSLMCFDPLEAIPIPFGSRVDRARVECLVRTITSALSASVSCRVVRTD-DCGGEMLCVGSSVSPGDCRELVSLCASL
-DTLLSLMCFKAPQ---------VFGSTIDYLVKTIVTVLHSSVSCEVLMFE---NEETLQIGSSILPRDCLKLIEMCNAV
-DTALSLMCFRAPQ---------VFDSTIEYLVKTIVSVLSSSIRCNVLRLE---KEEVLQIGSAISKKSFLEFIQVVNDV
-DTALSLMCFKAPQ---------VLDSVVEYSVKTIVSVLSSSICCEVFRFH---NEEVLQIGSFISRGHCMELIECVFDV
-NAALSLMCFRASE---------VHRARVECLVGTIVAMLSSSVSCRVLRLPDKRDEGFLRIGTSFSSEDCVQLIRVCVDV
-DTALSLMCFKAPQ---------VFDSVIEYLVKTIVSVLSSSVNCKVFLLQ---NQEFLLIGSASLGQNSVELVEMCNNV
-DTALSLMCFTAPQ---------VFDSMIEYFVKTIVSVLSTSISCKVLPFG---KEEILRVGSCISQRDCVEFIEVVNDV
-DTVLSLMCFKAPQ---------VFDSEIEYLVNTIAAVLLSSVRCKVFRYP---KGEILLIGSSISQXDCGHLIEACADV
-DAALSLMCFDPLE---------VNSARVNCLVRTLVSVLSASVSCCVVRPDGDAAEEMLCVGSSVSPLDCRELLRSCAAL
---------------------------------------------------------------------------------
-
-IEKLWGNGRLA--TLLFEAVV----R-SAASTCKISS-----FNAHGK----LMDGRNRAVSKLLAYLPGESSIENHKIP
-LEKLGDPDVADHSYDLLYAVV----K-AALLSPRYLCLF---PLPYYREDEDSTCDMGTISSVLTRHPTYQVLPNDYTIP
-VEKLRDCDDGRHSYDLLYAVA----K-TVVLSPHYQCLF---PLPYYKEEGERVSHMGTIAAELIKHPSNLVLPSDHSIP
-----------------------------------------------------------------------------MIFF
-VEKLGDRDDAMRGNAVTIKQTYGTPEIHDTQDVLGVCLF---PLPYYRENGEKKYEMATVAVDLTRHPSYQVIPSDGSIP
-IQKLEGHEVLA--SSLLHAVV----R-VAVSTSFCQFSFQFPPTLEEK----EVDERSVAFSKLHCHLPRECSLQNHEIP
-VSKLEENGMPC--HLLLCAFA----R-VAVSASCYRYLVPTMHVLDTK----SINGKSSALSKLLCSLPKD-SLNNHEIP
-ISKLKEHGMPI--DLLLSAVV----R-VAASASCYKYLSPSMRVLDVK----SIDGSITAISKLLCHLPMDFSLSNHEIP
-LASLKGHCGDL--HALLYAVV----K-AVISSSTYQGLLPSLPIGYLRN-EDTDCGVQTEISKLAYSLSDQTSCTGHEFP
-YAQLEGKGVFS--HLLLRAVV----R-GTVLASRYQYSYPFVPILDVK----SIEGRSAAVSKLHCHLPTELSLENEELP
-VSKLDQHGVPS--HLLLRSAA----R-VAVSTSCCRYMVPSMHVLDVK----SIDRRSTAISNLLSHLPGDLSLDNNKLP
-LEKLEGHGKLS--DSILCAIV----R-VASSASFYR--HQLMPVLGVK----SVDAKNTMISKLLCHLPREKFLENNKIP
-VEKLGDCGDRRHSYDLLYAVV----K-TILLSPHYQCLS---PLPYYKEEEERVSHMGTIAAELINHSSDHILPSDHSIP
---------------------------------------------------------------------------------
-
-LRILFWYRDPLSLKVDVSRILKEVVERPFLCVKRELFERGEWRDIVICLAISPTMFINTRSLLHKWLLLTGLASVFEVLA
-L--------------------------------------------------------------------RGLGAVLELQT
-PRLLLWHLDPSIIRHDLSAILQEMRSLLHFW-----------------------------------FLATGLGSVLELHN
-FRLLLWYLDPLILKHDVSKILQDTMKRPFLCLNKEFHERMDWRSIIICLVLSPTMFVETRALLHNWFLITGLASVLQLLI
-LRVLLWHLDPSILKHDLSAMLHEAITRPFLC-----------------------------------L-------------
-LRLLFWYLDPASLQHDISKILQDAVTMPFLCLSNEFHKRMDWRNLVICLALSPVMFIETRALLHNWFLMTGFAFILEFLV
-PRLLSWYLDPLALKHNISNILQVTMERPFLLSSKEFYDRMEWRSILMCLVLSPTMFIHTKALLHNWFMLTGLGSILELLI
-TRLLIWYLDPLALKHDISKILQETIKRPFLCLSMEFYERMDWRSILVCLVLSPIMFIDTRALLHDWFLQTGLSSVVELLM
-LRLQFWYLDPLILKHDISEILKEVIRRPFLCLRKELHDRMSWRNIITCLVTSPTFFKETKATLHTWFLFTGLTSVLDLKI
-LRLLFWYLDPLILKQAISKILEDTTGRPFICLSEEFHQRIDWRSIIICLVLSPVMFIETRALLHSWFLKTGLASVLQLLV
-LRLLSWYLDPLTLKHDISNILQETMKRPFLTLSKEFYERMEWRSILLCLVLSPMMFIHTRALLHDWFMLTDLGSVLEFLI
-LRLLLWYLDPLILKRDISNILQETMERPFLCLSRKFHESNDWRSIITLLVLSPFMFVEARALLHRWFLVTGLASVLELLI
-PRLLSWHLDPLILRHDLSAMLQEVIRRPLLC-----------------------------------L-------------
---------------------------------------------------------------------------------
-
-GLASAIMDTISRPSLWGIPMELASMLPFSDTYFPFQCQ-FLRILAGPLSSKSLLMLAHTVSKASAVPGQQQRDTNCKPTP
-AVVSSVLDVLFEPMAWGISMELGQKLPFSYDYFPHQHVDLLAILTGPLSCRKFVDLTSYIDSQS----------------
-ALVSSALDILLKPMSWGICIELGQRFPFSHAYFPNQQSDLLAILTGPLSCKGFLDLVSYISALVH-LDNSR----TRCSS
-EVVSMILDVVSRPTGWGISVEMGSKLPFSIAYFPYNHH-VYRILSGTLSSESFLHLVSIINVPIS-RAGNHSMPTIKQVP
-------RKELHDRIAWRVIIICLVCFPPAFLEMTSLFH------------------------------------------
-ALISVILDLLSRPTWWGIPMDLGFKLPLSDAYFPCQSH-LLRTLAGPLFSEKFVHLVHVIGSPIS-GARKQSASSFKRTG
-ELVALILDVISRPTWWGMSMELGSKLPYANAYFPYKNH-LLRILVGPLSSISFLQLVYRTTESVS-HIMEQFGRTCKASV
-ELVSLILDVISRPTWWGLSLELGLKLPFSNAYFPYKSD-FLRTLTGPFSYESFLQLVHMTRKSAY-LHRELCDPTIKPSA
-GIVLSVLDILSRPMWWGVPVELGLRFPSSYAYFSIRHHDLLTILTGQLSCKNLLHLVQYIKTEVA-ILSNIC-QSASHPS
-GLVSAVLDVISRPTWWGISMELGSKLPFSCAYFPNKNH-LLRILAGTFSAENFLHLVHATSELVS-LGKEQLHPAVKPKS
-ELVAVILDVISRPTWWGIPLELASELPFSNAYFPCKDH-LLRILSGPLVSSSFQQLVQVTSESDS-LVCKQFGPISKSST
-QLVSTTLDVVSRPMFWGISAEVGAKLPFLNAYFPYNQP-LLRTLVGPLSYDGLLQLVHNTKDXVP-FAQKQLYPTFKPPT
-------RKELYNRMEWRIIIICLVCCPTIFMEM-----------------------------------------------
--------------MWWGISMEMGMKYPSSYAYFPCRHHELLAIISGHISCNSFLDLVHYIKTRLA-PLAKHSDPTASHPS
-
-IKVQALDDK---------TEWALAINFPDWFYFASAMLFSEGK-SFENIHHICASKVADCRQVCDVEDL--SIAAATYIS
---------HASKGSVKYNSSWSMIVNFPLWFNFATALLFHREG-SHGYL-SEALSMEIISESIRDVNL---AHRAAMYLS
-QKNL--QLQPSKGLVNYNSAWCMIINFPVWFSFATALLFYREG-SQDYL-SETLSKEITVESISDVSL---VQRAAFYLS
-MKISTIGHK---------SVWAAAMNFPDWFFFASVLLFSEKS-FQDNFYSKCGIGVPRTEKRHDVEPLCFSSAAARYIA
----------------SWFLATSTITNFPIWFSFAAALLFHREG-FQGYL-SEILSEEKVSESISDISL---ARRAAFYLS
-IKLATINQN---------SLWALAVNFPDWFYFASILLFSGKS-FQDHFQPKCMIGAPKNRGPHDSVLL--SQAAARYIA
-LKIASTESK---------SIWALAICFPDWFYFASVLLFSTNC-FQKSHQSKRIFGVPKSGKTNNKEQSPPAAAAARYIA
-VRVASIDHK---------SIWALAISFPDWFYFASVLLFSDDKNSQQNIQVKCPLGVPEFGQ------LPASAAAATFIA
-VTNY--NHEGLA----------NVIDFPAWFYFANALIFYRNS-SQDYL-SEALCGRLRTEPVNDLEL---HRAALYYIS
-MDVTSIDHK---------SLWALAVDFPDWFYFASCLLFPENS-LRKEFHLKCTFAASKVGETHDKELL--SISAARYIS
-LKFASVDRK---------SIWALVICFPDWFYFASGLLFSNNC-YQNNCQLNCLLEAPNS------IMEQPAVSAASFIA
-VKMASTPSPFYNPTDPQMLHRSLAINFPDWFYLASALLFSEKS-THDSCHPECXLAASKVGKTHEELP---YVAAARYIA
---------------------------------------------------------------------------------
-HGIF--GHEALVDLVDNDSAWTMLMDFPAWFYFATALIFHGND-SQDYI-SSVICGEVKTETVKEMQR---KAK------
-
-WILNPGSGTIQESVSKSLIRVSEICISKSCGS---------EAYRTETITGKRK--KPDR------LVSGKINASSIVED
-WVLCPSNEDQRQILAGNILELSHSWARNNKKGPSH-------VHHTSTVNHRRKLRIPTVGDTEKLHLSTNPVSSL----
-WVLCPSNDDQCEVLSNNILEISRSWARNNKRCL----------GYQSTVNHRRKLRIPTAASSEKFHVPINTVSSL----
-WILSPADKSHQDLLVDWLTKLSESWTLKQFGS---------DTYNKEIADYRKKLKKTKFPVYKGDYNLPKEYNYVTIVL
-WVLCPSNEDECQMLANNMVELSNSWARNIKSRPSY-------AYHTSTVNHRRRLRIPTVGDTEKLHMSTNPVSSL----
-WVMSPLNKSNQDLLVGCLIKISEAWTRQQFGP---------GVHDKKALGCDKL-KKHKF-HGSKDYNLTKVGNSKMIDL
-WILSPNNQSQQDWLFGGLTKISEFWTLRQIDL---------GTSGRDIASCRKKLKNSKCYNIEEDFSLGTEDNCQTIGL
-WILSPVNKSNQDALFENLTKLSKCWNLKEISS---------DNSQNGMAGYKKKLKKPRFCDSKEDSTLGNKYDCQVIIL
-WVLCPIGEAHRDMLAENIDELSRSFVTQHKAKSIYEERSFSDMHPKNVLSRSKKLKIPKANSFEKHRMAPQEVSSLNIGV
-WILSPVSKSNQDLLVDFLTKISESWALKQYDS---------VMHNKEAAACKKKCKKPKLYDKREHYSLANEYDCQKMGI
-WILSPNSKPHQDLLFEGLTRMSECWSRKQIDS---------DVH-------------------------ENEYGCQVIGL
-WILSPLXKSHHASLXDCLIKXSXSLALKQFGS---------GSHDKEIHGYKKKLKKPKLCEE----------ESASIAV
---------------------------------------------------------------------------------
---------------------------------------------------------------------------------
-
-LLREFENNIT---NSVSYDLDSRKTHPSFSSGLQNNLLVRRVVVGVLFGSPYSVTDEEYELVLHYAATGKILDFKKSRST
--IKEFDDRCVKFCSKTANSQVQDEELSDL--PIHFNFLHLWIPLGILLVSSSFVNDQDCDMLLHYSSTGQVLESNEVQRK
--VKEFDDHCVKCCRTTAFPQVQVGKLLDLH-PSYFNLLHQWIPLGVLLASPSYINEQNCDILLRYTSTGQVLGSNEAQIQ
-WLKEFQNSYTKNQYKTASSLAFCEHNLSYSLRFQHSVLFRRIPLGILIGCPYYLDESGCEMLLHYSATGTIPLLRETHSG
--IQEFDNRCVNFCNQTAVSQVQD-ELSGFP-PSCISFLHLQIPLGVLLVSSSCVKDHDHDVLLHYASSGLILEADKVQTK
-WLREFQSTYLDFAKEAFYGSASRETNASCGHSLHEDLLVRGIPLGVLVGCPNSITDDGCELLLHYAATGRIGLMESKFSG
-WLKEFQSIM-KHGNESVNNLYSCEAN-SYVFAFENHMFFRRIPLGILIGFPSYVNEDGFELLLHYAATGRMLPL-TTKND
-WLKQFQNIM-KHN-ETIDELAFCEAK-SYALLPQHDKLFRRIPLGILTGSSGYINENGCELLLHYAATGRILDSLGTENT
-WLENFNAIHIEVCNENTASNVQSAVTSEQDANMKPNLLLARVPLGILLVSPSYLDELGCEILLHYAATGETMLAKEI-RK
-WLNEIENIYLQYANKTVNSSASADSNASH-GSTQQNVLLRRIPLGILIGCPNCITEDACALLLHYAATGNILRPRETVTS
-WLNEFHRVM-KYGVESTDKSSNCEAE-SYYFVLQNSMLFRRITLGVLIGCPSYVKEDGFELLLHYAATGRVLHL-TSNNA
-WLNGFSNIYTRYCNETSET------KPSCGLNLQKNVLFRRIPLGILLSCPHRINEDECELLLHYAATGRIFQLRETKTT
---------------------------------------------------------------------------------
---------------------------------------------------------------------------------
-
-GFKQGKKFSRISA----LLSNEITKEEATEGTLLVFNLTDTLESMCVSSFEAKEDAEKFINHFKLRSSKYLVKCIDRLIQ
-TKDHICNDSFS-----AS-CKGFTETWASAGASLVFRWLDLIINMSAVIFEREDICDHFVSQLKSKTNPYLLKCLYSLLE
-TKDHASNDGFL-----GS-CIGTAKRWPLIGPYLIFGWLDVVEDMSSLIFDCEDKCHRFVSQLRNKTGPYMLKCVKSLFK
-ALKHLKLDSEGQKDSIMWTEEY-TKEEAAAGASLVFRLTDVVLSMAASLFETDESGLEFICQVKVKAGRYLIKCIKKLLQ
-TKDHVGNHGFS-----AS-RRGFTERWALSGACVIFSWFDVIDDMSAVIFECEDTCQHFVSELRTKTSPYLINCVNL---
--SKHAEQISEFKEGSNTQAGMCNTKREAIAGACLAFRLTDIVQSMSASFFENQEIGQEYIYQVKLKASKYLIKCIKRLIQ
-RKDHLEKKSMGLEDLGL--G-SNSKKEAVAGACLVFSLSDTVERISASLFENEKSGLDAISQVKLRAGRYLIKCLKSLIQ
-SLKHINYNSSGPEDL-F--G-GINKEEAVLGACLVFSLTDVVDRMSVSLFETEKTGEDFLCLVKLRAGRYLLKCIKRLTH
-LKDHYGYSDLG-----VL-FHSDPSKWALKGACLVFNLLDVIEDMSIMLFDSEDNRIGFVNQMKGKAGRFLIRCLRMLLN
-GLRHVKQKSER-QDLTIWMGKC-SKRDVLAGACLVFTLTDAVDSISASLFDTEDSELEYIYQVKVKAGKYLMKCIKRLSQ
-RMKHVDE---------------FNRKEAVAGACLIFSLTDIVERISASSFENEKSGLDIICQVKLGASKYLIKCMKKLIE
-GLKHVKWSSKWHTNSTAWGDEC-NEKEASAGACLVFSLTDIIESMSASLFETEDAGADFICRVKMQVSKYLIKCIKRLIQ
---------------------------------------------------------------------------------
---GCIGHDEFT-----PW-SADDATKWALNGACLVFNLLDLIEDMSVMLFDCEDTRVDFLHQMKGKASGYLLKCVKLLFE
-
-LHCT------QDGDPILSDINIRLLQWTVKGLEDPHFNKVLDDIAAKLACIFSRV------------
-VL-----DEASQ-RDFLVDLHDRLLNWNKKGQ-SFDGFEAFEDIILRMNKKFHFRT-----------
-VL-----EQANQDKDLVIDLHNRLLNWNKNGQ-G---CEIFGDVILEMNKRFNLPV-----------
-FND----------GIMLMDLFNRLVQWRNQGQEVFQGCTDLDDVINGLGLKLSSL------------
-VL-----NEAGQDKDSVIDLHDRLLDWNNKLK-SFDGCEAFKDVILQLKKKVLLPS-----------
-LGVD------EDGPMLLMGLHDRLLQWRHQGKEVIEVNKDLDDITSDLSHKLSLL------------
-LNIA------EDGHATQMDLHDRLERWRHQGQEMLNIDKDLDDAIKALSNELLPS------------
-FNVD------EDGVPMLLDLQGRLERWRHQGKEVPEFHKDLDDALKGLSTESS--------------
-HQEIE--IDGVAVGDMMLDVHHRLLKWNKLGLGMFEGYKEFDDFVECFLTFLILSFEDETLTTVLES
-LNID------KDEVLTLRDLRSRLGRWRHQGQETLQVQNDIDDVINDLSQKLSSL------------
-PNIF------EDNK-MLVDLHDRLERWRHQGQEMLELDKDLDDTIKGLSNELLLL------------
-LKID------NG-NWEVMDLRRRLENWRHQGQEVPELNKDLDDEWGKDYAKQQFFGTEPRCIRLASF
--------------------------------------------------------------------
-CECHEFYNGAIGVRDNVLDLYRRLVTWRQQGPEGFEGYKAFDDVVDDFAKRFRIVE-----------
-
--- a/fasta2phylip/tool_dependencies.xml	Fri Apr 22 08:24:30 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="biopython" version="1.66">
-        <repository changeset_revision="ef89610ae47c" name="package_biopython_1_66" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu"  />
-    </package>
-</tool_dependency>
\ No newline at end of file