annotate tool_dependencies.xml @ 0:f7b03e9db640 draft default tip

planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
author dcorreia
date Tue, 31 Jan 2017 10:47:55 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
1 <?xml version="1.0"?>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
2 <tool_dependency>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
3 <package name="phyml-sms" version="1.7">
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
4 <install version="1.0">
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
5 <actions>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
6 <action type="download_by_url">http://www.atgc-montpellier.fr/download/sources/sms/sms-1.7.zip</action>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
7 <action type="shell_command">make</action>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
8 <action type="chmod"><file mode="755">$INSTALL_DIR/sms.sh</file></action>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
9 <action type="chmod"><file mode="755">$INSTALL_DIR/phyml-src/phyml</file></action>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
10 <action type="move_directory_files">
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
11 <source_directory>$TMP_WORK_DIR/sms-1.7</source_directory>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
12 <destination_directory>$INSTALL_DIR/sources</destination_directory>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
13 </action>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
14 <action type="set_environment">
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/sources</environment_variable>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
16 </action>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
17 </actions>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
18 </install>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
19 </package>
f7b03e9db640 planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
dcorreia
parents:
diff changeset
20 </tool_dependency>