Mercurial > repos > dcorreia > package_phyml_sms_1_7

changeset 0:f7b03e9db640 draft default tip

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planemo upload commit e0ca504b3313992020acf8ab7aed0a261237766e-dirty
author dcorreia
date Tue, 31 Jan 2017 10:47:55 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 20 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jan 31 10:47:55 2017 -0500
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="phyml-sms" version="1.7">
+		<install version="1.0">
+			<actions>
+				<action type="download_by_url">http://www.atgc-montpellier.fr/download/sources/sms/sms-1.7.zip</action>
+                <action type="shell_command">make</action>
+                <action type="chmod"><file mode="755">$INSTALL_DIR/sms.sh</file></action>
+                <action type="chmod"><file mode="755">$INSTALL_DIR/phyml-src/phyml</file></action>
+                <action type="move_directory_files">
+                    <source_directory>$TMP_WORK_DIR/sms-1.7</source_directory>
+                    <destination_directory>$INSTALL_DIR/sources</destination_directory>
+                </action>
+				<action type="set_environment">
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/sources</environment_variable>
+				</action>
+			</actions>
+		</install>
+	</package>
+</tool_dependency>
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