diff vidjil.xml @ 0:fe4001bdf8d4 draft

Uploaded
author davidvanzessen
date Tue, 09 Dec 2014 03:55:01 -0500
parents
children d6b3bde8e63d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vidjil.xml	Tue Dec 09 03:55:01 2014 -0500
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+<tool id="vidjil_galaxy_wrapper" name="Vidjil" version="1.0">
+	<description></description>
+	<command interpreter="bash">
+		vidjil.sh $in_file $out_file $out_file.files_path $database $limit_reads $limit_ratio
+	</command>
+	<inputs>
+		<param name="in_file" type="data" format="fasta" label="Data to Process" />
+		<param name="database" type="select" label="Database">
+			<option value="current">Germline database from IMGT of 30-9-14</option>
+			<option value="download">Download newest database from IMGT</option>
+		</param>
+		<param name="limit_reads" type="text" label="Minimal number of reads supporting a clone" value='10'/>
+		<param name="limit_ratio" type="text" label="Minimal percentage of reads supporting a clone" value='0'/>
+	</inputs>
+	<outputs>
+		<data format="html" name="out_file" />
+	</outputs>
+	<help>
+		germline database from imgt (30-9-14)
+	</help>
+</tool>