Mercurial > repos > davidvanzessen > vidjil_with_browser
diff vidjil.xml @ 0:fe4001bdf8d4 draft
Uploaded
author | davidvanzessen |
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date | Tue, 09 Dec 2014 03:55:01 -0500 |
parents | |
children | d6b3bde8e63d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vidjil.xml Tue Dec 09 03:55:01 2014 -0500 @@ -0,0 +1,21 @@ +<tool id="vidjil_galaxy_wrapper" name="Vidjil" version="1.0"> + <description></description> + <command interpreter="bash"> + vidjil.sh $in_file $out_file $out_file.files_path $database $limit_reads $limit_ratio + </command> + <inputs> + <param name="in_file" type="data" format="fasta" label="Data to Process" /> + <param name="database" type="select" label="Database"> + <option value="current">Germline database from IMGT of 30-9-14</option> + <option value="download">Download newest database from IMGT</option> + </param> + <param name="limit_reads" type="text" label="Minimal number of reads supporting a clone" value='10'/> + <param name="limit_ratio" type="text" label="Minimal percentage of reads supporting a clone" value='0'/> + </inputs> + <outputs> + <data format="html" name="out_file" /> + </outputs> + <help> + germline database from imgt (30-9-14) + </help> +</tool>