Mercurial > repos > davidvanzessen > vidjil_with_browser
comparison vidjil.xml @ 0:fe4001bdf8d4 draft
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| author | davidvanzessen |
|---|---|
| date | Tue, 09 Dec 2014 03:55:01 -0500 |
| parents | |
| children | d6b3bde8e63d |
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| -1:000000000000 | 0:fe4001bdf8d4 |
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| 1 <tool id="vidjil_galaxy_wrapper" name="Vidjil" version="1.0"> | |
| 2 <description></description> | |
| 3 <command interpreter="bash"> | |
| 4 vidjil.sh $in_file $out_file $out_file.files_path $database $limit_reads $limit_ratio | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="in_file" type="data" format="fasta" label="Data to Process" /> | |
| 8 <param name="database" type="select" label="Database"> | |
| 9 <option value="current">Germline database from IMGT of 30-9-14</option> | |
| 10 <option value="download">Download newest database from IMGT</option> | |
| 11 </param> | |
| 12 <param name="limit_reads" type="text" label="Minimal number of reads supporting a clone" value='10'/> | |
| 13 <param name="limit_ratio" type="text" label="Minimal percentage of reads supporting a clone" value='0'/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="html" name="out_file" /> | |
| 17 </outputs> | |
| 18 <help> | |
| 19 germline database from imgt (30-9-14) | |
| 20 </help> | |
| 21 </tool> |