Mercurial > repos > davidvanzessen > vidjil_with_browser
comparison germline/TRAJ.fa @ 0:fe4001bdf8d4 draft
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author | davidvanzessen |
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date | Tue, 09 Dec 2014 03:55:01 -0500 |
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-1:000000000000 | 0:fe4001bdf8d4 |
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1 >X02884|TRAJ1*01|Homo sapiens|ORF|J-REGION|2363..2424|62 nt|2| | | | |62+0=62| |rev-compl| | |
2 gtatgaaagtattacctcccagttgcaatttggcaaaggaaccagagtttccacttctcc | |
3 cc | |
4 >M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| |rev-compl| | |
5 atactcacgggaggaggaaacaaactcacctttgggacaggcactcagctaaaagtggaa | |
6 ctca | |
7 >M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| |rev-compl| | |
8 tgaattcaggatacagcaccctcacctttgggaaggggactatgcttctagtctctccag | |
9 >X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| |rev-compl| | |
10 ggatggatagcagctataaattgatcttcgggagtgggaccagactgctggtcaggcctg | |
11 >M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| |rev-compl| | |
12 tgaattctgggggttaccagaaagttacctttggaattggaacaaagctccaagtcatcc | |
13 caa | |
14 >AC023226|TRAJ13*02|Homo sapiens|F|J-REGION|51292..51354|63 nt|3| | | | |63+0=63| | | | |
15 tgaattctgggggttaccagaaagttacctttggaactggaacaaagctccaagtcatcc | |
16 caa | |
17 >M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| |rev-compl| | |
18 atttatagcacattcatctttgggagtgggacaagattatcagtaaaacctg | |
19 >X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| |rev-compl| | |
20 ccaaccaggcaggaactgctctgatctttgggaagggaaccaccttatcagtgagttcca | |
21 >M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| |rev-compl| | |
22 ccaaccaggcaggaactgctctgatctttgggaagggaacccacctatcagtgagttcca | |
23 >M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| |rev-compl| | |
24 ggttttcagatggccagaagctgctctttgcaaggggaaccatgttaaaggtggatctta | |
25 >X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| |rev-compl| | |
26 tgatcaaagctgcaggcaacaagctaacttttggaggaggaaccagggtgctagttaaac | |
27 caa | |
28 >M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| |rev-compl| | |
29 ccgacagaggctcaaccctggggaggctatactttggaagaggaactcagttgactgtct | |
30 ggcctg | |
31 >M94081|TRAJ19*01|Homo sapiens|ORF|J-REGION|65489..65548|60 nt|3| | | | |60+0=60| |rev-compl| | |
32 gctatcaaagattttacaatttcacctttggaaagggatccaaacataatgtcactccaa | |
33 >X02884|TRAJ2*01|Homo sapiens|ORF|J-REGION|1397..1462|66 nt|3| | | | |66+0=66| |rev-compl| | |
34 tgaatactggaggaacaattgataaactcacatttgggaaagggacccatgtattcatta | |
35 tatctg | |
36 >M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| |rev-compl| | |
37 gttctaacgactacaagctcagctttggagccggaaccacagtaactgtaagagcaa | |
38 >M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| |rev-compl| | |
39 tacaacttcaacaaattttactttggatctgggaccaaactcaatgtaaaaccaa | |
40 >X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| |rev-compl| | |
41 tttcttctggttctgcaaggcaactgacctttggatctgggacacaattgactgttttac | |
42 ctg | |
43 >M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| |rev-compl| | |
44 tgatttataaccagggaggaaagcttatcttcggacagggaacggagttatctgtgaaac | |
45 cca | |
46 >X58763|TRAJ23*02|Homo sapiens|(F)|J-REGION|61..123|63 nt|3| | | | |63+0=63| |rev-compl| | |
47 tgatttataaccagggaggaaagcttatcttcggacagggaacggagctatctgtgaaac | |
48 cca | |
49 >X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| |rev-compl| | |
50 tgacaactgacagctgggggaaattcgagtttggagcagggacccaggttgtggtcaccc | |
51 cag | |
52 >M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| |rev-compl| | |
53 tgacaactgacagctgggggaaattgcagtttggagcagggacccaggttgtggtcaccc | |
54 cag | |
55 >X02888|TRAJ25*01|Homo sapiens|ORF|J-REGION|35..94|60 nt|3| | | | |60+0=60| |rev-compl| | |
56 cagaaggacaaggcttctcctttatctttgggaaggggacaaggctgcttgtcaagccaa | |
57 >M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| |rev-compl| | |
58 gggataactatggtcagaattttgtctttggtcccggaaccagattgtccgtgctgccct | |
59 >M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| |rev-compl| | |
60 taacaccaatgcaggcaaatcaacctttggggatgggactacgctcactgtgaagccaa | |
61 >M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| |rev-compl| | |
62 catactctggggctgggagttaccaactcactttcgggaaggggaccaaactctcggtca | |
63 taccaa | |
64 >M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| |rev-compl| | |
65 ggaattcaggaaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaa | |
66 >X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| |rev-compl| | |
67 ggggtacagcagtgcttccaagataatctttggatcagggaccagactcagcatccggcc | |
68 aa | |
69 >M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| |rev-compl| | |
70 tgaacagagatgacaagatcatctttggaaaagggacacgacttcatattctcccca | |
71 >M14905|TRAJ31*01|Homo sapiens|F|J-REGION|77..132|56 nt|2| | | | |56+0=56| |rev-compl| | |
72 gaataacaatgccagactcatgtttggagatggaactcagctggtggtgaagccca | |
73 >M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| |rev-compl| | |
74 tgaattatggcggtgctacaaacaagctcatctttggaactggcactctgcttgctgtcc | |
75 agccaa | |
76 >AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299|60 nt|3| |1| | |60+0=60|partial in 5'|rev-compl| | |
77 atggtggtgctacaaacaagctcatctttggaactggcactctgcttgctgtccagccaa | |
78 >M94081|TRAJ33*01|Homo sapiens|F|J-REGION|48843..48899|57 nt|3| | | | |57+0=57| |rev-compl| | |
79 tggatagcaactatcagttaatctggggcgctgggaccaagctaattataaagccag | |
80 >M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| |rev-compl| | |
81 tcttataacaccgacaagctcatctttgggactgggaccagattacaagtctttccaa | |
82 >M94081|TRAJ35*01|Homo sapiens|ORF|J-REGION|46885..46943|59 nt|2| | | | |59+0=59| |rev-compl| | |
83 gataggctttgggaatgtgctgcattgcgggtccggcactcaagtgattgttttaccac | |
84 >M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| |rev-compl| | |
85 tcaaactggggcaaacaacctcttctttgggactggaacgagactcaccgttattccct | |
86 >M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| |rev-compl| | |
87 tggctctggcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc | |
88 ag | |
89 >AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397|62 nt|2| |1| | |62+0=62| |rev-compl| | |
90 tggctctagcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc | |
91 ag | |
92 >M94081|TRAJ38*01|Homo sapiens|F|J-REGION|42473..42534|62 nt|2| | | | |62+0=62| |rev-compl| | |
93 taatgctggcaacaaccgtaagctgatttggggattgggaacaagcctggcagtaaatcc | |
94 ga | |
95 >M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| |rev-compl| | |
96 tgaataataatgcaggcaacatgctcacctttggagggggaacaaggttaatggtcaaac | |
97 ccc | |
98 >M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| |rev-compl| | |
99 tgttttctggtggctacaataagctgatttttggagcagggaccaggctggctgtacacc | |
100 cat | |
101 >M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| |rev-compl| | |
102 actacctcaggaacctacaaatacatctttggaacaggcaccaggctgaaggttttagca | |
103 a | |
104 >M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| |rev-compl| | |
105 gaactcaaattccgggtatgcactcaacttcggcaaaggcacctcgctgttggtcacacc | |
106 cc | |
107 >M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| |rev-compl| | |
108 tgaattatggaggaagccaaggaaatctcatctttggaaaaggcactaaactctctgtta | |
109 aaccaa | |
110 >M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| |rev-compl| | |
111 acaataacaatgacatgcgctttggagcagggaccagactgacagtaaaaccaa | |
112 >M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| |rev-compl| | |
113 taaataccggcactgccagtaaactcacctttgggactggaacaagacttcaggtcacgc | |
114 tcg | |
115 >M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| |rev-compl| | |
116 tgtattcaggaggaggtgctgacggactcacctttggcaaagggactcatctaatcatcc | |
117 agccct | |
118 >M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| |rev-compl| | |
119 agaagaaaagcagcggagacaagctgacttttgggaccgggactcgtttagcagttaggc | |
120 cca | |
121 >M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| |rev-compl| | |
122 tggaatatggaaacaaactggtctttggcgcaggaaccattctgagagtcaagtcct | |
123 >AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368|57 nt|3| |1| | |57+0=57| |rev-compl| | |
124 tggaatatggaaacaagctggtctttggcgcaggaaccattctgagagtcaagtcct | |
125 >M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| |rev-compl| | |
126 tatctaactttggaaatgagaaattaacctttgggactggaacaagactcaccatcatac | |
127 cca | |
128 >M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| |rev-compl| | |
129 gaacaccggtaaccagttctattttgggacagggacaagtttgacggtcattccaa | |
130 >M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| |rev-compl| | |
131 tggacacgggcaggagagcacttacttttgggagtggaacaagactccaagtgcaaccaa | |
132 >M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| |rev-compl| | |
133 tgaaaacctcctacgacaaggtgatatttgggccagggacaagcttatcagtcattccaa | |
134 >M94081|TRAJ51*01|Homo sapiens|P|J-REGION|27429..27491|63 nt|3| | | | |63+0=63| |rev-compl| | |
135 agatgcgtgacagctatgagaagctgatatttggaaaggagacatgactaactgtgaagc | |
136 caa | |
137 >M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| |rev-compl| | |
138 ctaatgctggtggtactagctatggaaagctgacatttggacaagggaccatcttgactg | |
139 tccatccaa | |
140 >M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| |rev-compl| | |
141 agaatagtggaggtagcaactataaactgacatttggaaaaggaactctcttaaccgtga | |
142 atccaa | |
143 >M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| |rev-compl| | |
144 taattcagggagcccagaagctggtatttggccaaggaaccaggctgactatcaacccaa | |
145 >M94081|TRAJ55*01|Homo sapiens|P|J-REGION|21944..22000|57 nt|3| | | | |57+0=57| |rev-compl| | |
146 acaagtgctggtaatgctcctgttggggaaaggggatgagtacaaaaataaatccaa | |
147 >M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| |rev-compl| | |
148 ttatactggagccaatagtaagctgacatttggaaaaggaataactctgagtgttagacc | |
149 ag | |
150 >M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| |rev-compl| | |
151 taactcagggcggatctgaaaagctggtctttggaaagggaacgaaactgacagtaaacc | |
152 cat | |
153 >M94081|TRAJ58*01|Homo sapiens|ORF|J-REGION|17954..18016|63 nt|3| | | | |63+0=63| |rev-compl| | |
154 tttaagaaaccagtggctctaggttgacctttggggaaggaacacagctcacagtgaatc | |
155 ctg | |
156 >M94081|TRAJ59*01|Homo sapiens|ORF|J-REGION|16801..16854|54 nt|3| | | | |54+0=54| |rev-compl| | |
157 ggaaggaaggaaacaggaaatttacatttggaatggggacgcaagtgagagtga | |
158 >M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| |rev-compl| | |
159 tgcatcaggaggaagctacatacctacatttggaagaggaaccagccttattgttcatcc | |
160 gt | |
161 >M94081|TRAJ60*01|Homo sapiens|P|J-REGION|16554..16610|57 nt|3| | | | |57+0=57| |rev-compl| | |
162 tgaagatcacctagatgctcaactttgggaaggggactgagttaattgtgagcctgg | |
163 >M94081|TRAJ61*01|Homo sapiens|ORF|J-REGION|15564..15623|60 nt|3| | | | |60+0=60| |rev-compl| | |
164 ggtaccgggttaataggaaactgacatttggagccaacactagaggaatcatgaaactca | |
165 >M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| |rev-compl| | |
166 tgactatgggaacaacagactcgcttttgggaaggggaaccaagtggtggtcataccaa | |
167 >M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| |rev-compl| | |
168 tgaacacaggctttcagaaacttgtatttggaactggcacccgacttctggtcagtccaa | |
169 >M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| |rev-compl| | |
170 ggaaatactggaggcttcaaaactatctttggagcaggaacaagactatttgttaaagca | |
171 a |