Mercurial > repos > davidvanzessen > report_clonality_tcell_igg

comparison r_wrapper.sh @ 7:c7d3b68040d7 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Fri, 22 Aug 2014 11:02:46 -0400
parents b850200d4335
children
comparison
equal deleted inserted replaced
6:f4ff7450ef16 7:c7d3b68040d7
87 87
88 #overview 88 #overview
89 echo "<tr><td>Coincidence Type</td><td>Raw Coincidence Freq</td><td>Coincidence Weight</td><td>Coincidences, Weighted</td></tr>" >> $outputFile 89 echo "<tr><td>Coincidence Type</td><td>Raw Coincidence Freq</td><td>Coincidence Weight</td><td>Coincidences, Weighted</td></tr>" >> $outputFile
90 while IFS=, read type count weight weightedCount 90 while IFS=, read type count weight weightedCount
91 do 91 do
92 echo "<tr><td>$type</td><td>$count</td><td>$weight</td><td>$weightedCount</td></tr>" >> $outputFile 92 echo "<tr><td><a href='ClonalitySequences_${sample}_${type}.csv'>$type</a></td><td>$count</td><td>$weight</td><td>$weightedCount</td></tr>" >> $outputFile
93 done < $outputDir/ClonalityOverView_$sample.csv 93 done < $outputDir/ClonalityOverView_$sample.csv
94 echo "</table></div>" >> $outputFile 94 echo "</table></div>" >> $outputFile
95 done 95 done
96 echo "</div></div>" >> $outputFile 96 echo "</div></div>" >> $outputFile
97 fi 97 fi