Mercurial > repos > davidvanzessen > report_clonality_tcell_igg

changeset 7:c7d3b68040d7 draft default tip

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Uploaded
author davidvanzessen
date Fri, 22 Aug 2014 11:02:46 -0400
parents f4ff7450ef16
children
files r_wrapper.sh
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/r_wrapper.sh	Fri Aug 22 11:02:20 2014 -0400
+++ b/r_wrapper.sh	Fri Aug 22 11:02:46 2014 -0400
@@ -89,7 +89,7 @@
 		echo "<tr><td>Coincidence Type</td><td>Raw Coincidence Freq</td><td>Coincidence Weight</td><td>Coincidences, Weighted</td></tr>" >> $outputFile
 		while IFS=, read type count weight weightedCount
 		do
-			echo "<tr><td>$type</td><td>$count</td><td>$weight</td><td>$weightedCount</td></tr>" >> $outputFile
+			echo "<tr><td><a href='ClonalitySequences_${sample}_${type}.csv'>$type</a></td><td>$count</td><td>$weight</td><td>$weightedCount</td></tr>" >> $outputFile
 		done < $outputDir/ClonalityOverView_$sample.csv
 		echo "</table></div>" >> $outputFile
 	done