Mercurial > repos > davidvanzessen > plotting_merged
changeset 17:e445e8a41185 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Fri, 27 Sep 2013 08:51:58 -0400 |
| parents | ee00fc3ec264 |
| children | 705b77be17cf |
| files | RScript.r |
| diffstat | 1 files changed, 8 insertions(+), 3 deletions(-) [+] |
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--- a/RScript.r Fri Sep 27 07:13:45 2013 -0400 +++ b/RScript.r Fri Sep 27 08:51:58 2013 -0400 @@ -54,6 +54,8 @@ PRODFJ = merge(PRODFJ, Total, by.x='Sample', by.y='Sample', all.x=TRUE) PRODFJ = ddply(PRODFJ, c("Sample", "Top.J.Gene"), summarise, relFreq= (Length*100 / Total)) +merged = rbind(PRODFV, PRODFD, PRODFJ) + V = c("v.name\tchr.orderV\nIGHV7-81\t1\nIGHV3-74\t2\nIGHV3-73\t3\nIGHV3-72\t4\nIGHV3-71\t5\nIGHV2-70\t6\nIGHV1-69\t7\nIGHV3-66\t8\nIGHV3-64\t9\nIGHV4-61\t10\nIGHV4-59\t11\nIGHV1-58\t12\nIGHV3-53\t13\nIGHV3-52\t14\nIGHV5-a\t15\nIGHV5-51\t16\nIGHV3-49\t17\nIGHV3-48\t18\nIGHV3-47\t19\nIGHV1-46\t20\nIGHV1-45\t21\nIGHV3-43\t22\nIGHV4-39\t23\nIGHV3-35\t24\nIGHV4-34\t25\nIGHV3-33\t26\nIGHV4-31\t27\nIGHV4-30-4\t28\nIGHV4-30-2\t29\nIGHV3-30-3\t30\nIGHV3-30\t31\nIGHV4-28\t32\nIGHV2-26\t33\nIGHV1-24\t34\nIGHV3-23\t35\nIGHV3-22\t36\nIGHV3-21\t37\nIGHV3-20\t38\nIGHV3-19\t39\nIGHV1-18\t40\nIGHV3-15\t41\nIGHV3-13\t42\nIGHV3-11\t43\nIGHV3-9\t44\nIGHV1-8\t45\nIGHV3-7\t46\nIGHV2-5\t47\nIGHV7-4-1\t48\nIGHV4-4\t49\nIGHV4-b\t50\nIGHV1-3\t51\nIGHV1-2\t52\nIGHV6-1\t53") tcV = textConnection(V) Vchain = read.table(tcV, sep="\t", header=TRUE) @@ -89,9 +91,12 @@ #plotall #ggsave(outFile, dpi=125) +sink(outFile, append=FALSE, split=FALSE) +merged +unlink(outFile) -png(outFile,width = 1920, height = 1200) -print(plotall = grid.arrange(pV, arrangeGrob(pD, pJ, ncol=2), ncol=1, widths=c(1,1.2))) -dev.off() +#png(outFile,width = 1920, height = 1200) +#print(plotall = grid.arrange(pV, arrangeGrob(pD, pJ, ncol=2), ncol=1, widths=c(1,1.2))) +#dev.off()