Mercurial > repos > davidvanzessen > plotting_merged

changeset 24:41ac5d41cbe3 draft

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Uploaded
author davidvanzessen
date Mon, 30 Sep 2013 03:41:11 -0400
parents 294cb9f3563d
children 10522dec2d35
files RScript.r
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/RScript.r	Mon Sep 30 03:36:00 2013 -0400
+++ b/RScript.r	Mon Sep 30 03:41:11 2013 -0400
@@ -54,7 +54,6 @@
 PRODFJ = merge(PRODFJ, Total, by.x='Sample', by.y='Sample', all.x=TRUE)
 PRODFJ = ddply(PRODFJ, c("Sample", "Top.J.Gene"), summarise, relFreq= (Length*100 / Total))
 
-merged = rbind(PRODFV, PRODFD, PRODFJ)
 
 V = c("v.name\tchr.orderV\nIGHV7-81\t1\nIGHV3-74\t2\nIGHV3-73\t3\nIGHV3-72\t4\nIGHV3-71\t5\nIGHV2-70\t6\nIGHV1-69\t7\nIGHV3-66\t8\nIGHV3-64\t9\nIGHV4-61\t10\nIGHV4-59\t11\nIGHV1-58\t12\nIGHV3-53\t13\nIGHV3-52\t14\nIGHV5-a\t15\nIGHV5-51\t16\nIGHV3-49\t17\nIGHV3-48\t18\nIGHV3-47\t19\nIGHV1-46\t20\nIGHV1-45\t21\nIGHV3-43\t22\nIGHV4-39\t23\nIGHV3-35\t24\nIGHV4-34\t25\nIGHV3-33\t26\nIGHV4-31\t27\nIGHV4-30-4\t28\nIGHV4-30-2\t29\nIGHV3-30-3\t30\nIGHV3-30\t31\nIGHV4-28\t32\nIGHV2-26\t33\nIGHV1-24\t34\nIGHV3-23\t35\nIGHV3-22\t36\nIGHV3-21\t37\nIGHV3-20\t38\nIGHV3-19\t39\nIGHV1-18\t40\nIGHV3-15\t41\nIGHV3-13\t42\nIGHV3-11\t43\nIGHV3-9\t44\nIGHV1-8\t45\nIGHV3-7\t46\nIGHV2-5\t47\nIGHV7-4-1\t48\nIGHV4-4\t49\nIGHV4-b\t50\nIGHV1-3\t51\nIGHV1-2\t52\nIGHV6-1\t53")
 tcV = textConnection(V)
@@ -91,8 +90,10 @@
 #plotall
 #ggsave(outFile, dpi=125)
 
-sink(outFile, append=FALSE, split=FALSE)
-merged
+sink(outFile, append=TRUE, split=FALSE)
+PRODFV
+PRODFD
+PRODFJ
 unlink(outFile)
 
 #png(outFile,width = 1920, height = 1200)