Mercurial > repos > davidvanzessen > plotting_merged

changeset 40:2e2a29d505c7 draft

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Uploaded
author davidvanzessen
date Fri, 22 Nov 2013 07:51:04 -0500
parents a9ad03d52680
children 46c5d9d396a5
files plotting_merged.xml
diffstat 1 files changed, 10 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/plotting_merged.xml	Fri Nov 15 04:00:13 2013 -0500
+++ b/plotting_merged.xml	Fri Nov 22 07:51:04 2013 -0500
@@ -1,10 +1,18 @@
 <tool id="plotting_merged" name="Plotting the merged data" version="1.0">
 	<description>Creating a graph of the merged reports.</description>
 	<command interpreter="bash">
-		r_wrapper.sh $in_file $out_file $out_file.files_path
+		r_wrapper.sh $in_file $out_file $out_file.files_path $clonaltype_select
 	</command>
 	<inputs>
-		<param name="in_file" format="tabular" type="data" label="Data to Process" />
+	<param name="in_file" format="tabular" type="data" label="Data to Process" />
+	<param name="clonaltype_select" type="select" label="Clonal Type Definition">
+		<option value="Top.V.Gene,CDR3.Seq">Top.V.Gene, CDR3.Seq</option>
+		<option value="Top.V.Gene,CDR3.Seq.DNA">Top.V.Gene, CDR3.Seq.DNA</option>
+		<option value="Top.V.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.J.Gene, CDR3.Seq</option>
+		<option value="Top.V.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.J.Gene, CDR3.Seq.DNA</option>
+		<option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3.Seq.DNA</option>
+	</param>
+
 	</inputs>
 	<outputs>
 		<data format="html" name="out_file" />