Mercurial > repos > davidvanzessen > mutation_analysis

diff gene_identification.py @ 11:b0242cd1da34 draft

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author davidvanzessen
date Thu, 26 Mar 2015 10:16:20 -0400
parents 4b83265b2686
children c518cf0d4adb
line wrap: on
line diff
--- a/gene_identification.py	Thu Mar 26 10:00:24 2015 -0400
+++ b/gene_identification.py	Thu Mar 26 10:16:20 2015 -0400
@@ -41,8 +41,8 @@
 print "Number of input sequences:", len(dic)
 
 #lambda/kappa reference sequence
-searchstrings = {"ca": "catccccgaccagccccaaggtcttcccgctgagcctctgcagcacccagccagatgggaacgtggtcatcgcctgcctg",
-                 "cg": "ctccaccaagggcccatcggtcttccccctggcaccctcctccaagagcacctctgggggcacagcggccctgggctgcctggtcaaggactacttccccgaaccggtgacggtgtcgtggaactcaggcgccctgacca",
+searchstrings = {"ca": "catccccgaccagccccaaggtcttcccgctgagcctctgcagcacccagccagatgggaacgtggtcatcgcctgcctgg",
+                 "cg": "ctccaccaagggcccatcggtcttccccctggcaccctcctccaagagcacctctgggggcacagcggccctgggctgcctggtcaaggactacttccccgaaccggtgacggtgtcgtggaactcaggcgccctgaccag",
                  "cm": "gggagtgcatccgccccaacccttttccccctcgtctcctgtgagaattccc"}
 
 compiledregex = {"ca": [],