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comparison gene_identification.py @ 11:b0242cd1da34 draft

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author davidvanzessen
date Thu, 26 Mar 2015 10:16:20 -0400
parents 4b83265b2686
children c518cf0d4adb
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10:4b83265b2686 11:b0242cd1da34
39 dic[ID] = linesplt[seqIndex] 39 dic[ID] = linesplt[seqIndex]
40 40
41 print "Number of input sequences:", len(dic) 41 print "Number of input sequences:", len(dic)
42 42
43 #lambda/kappa reference sequence 43 #lambda/kappa reference sequence
44 searchstrings = {"ca": "catccccgaccagccccaaggtcttcccgctgagcctctgcagcacccagccagatgggaacgtggtcatcgcctgcctg", 44 searchstrings = {"ca": "catccccgaccagccccaaggtcttcccgctgagcctctgcagcacccagccagatgggaacgtggtcatcgcctgcctgg",
45 "cg": "ctccaccaagggcccatcggtcttccccctggcaccctcctccaagagcacctctgggggcacagcggccctgggctgcctggtcaaggactacttccccgaaccggtgacggtgtcgtggaactcaggcgccctgacca", 45 "cg": "ctccaccaagggcccatcggtcttccccctggcaccctcctccaagagcacctctgggggcacagcggccctgggctgcctggtcaaggactacttccccgaaccggtgacggtgtcgtggaactcaggcgccctgaccag",
46 "cm": "gggagtgcatccgccccaacccttttccccctcgtctcctgtgagaattccc"} 46 "cm": "gggagtgcatccgccccaacccttttccccctcgtctcctgtgagaattccc"}
47 47
48 compiledregex = {"ca": [], 48 compiledregex = {"ca": [],
49 "cg": [], 49 "cg": [],
50 "cm": []} 50 "cm": []}