Mercurial > repos > davidvanzessen > mutation_analysis

diff mutation_analysis.r @ 42:9afd8430de2c draft

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Uploaded
author davidvanzessen
date Mon, 02 Nov 2015 09:48:00 -0500
parents e022c21f8c47
children 099cc1254f74
line wrap: on
line diff
--- a/mutation_analysis.r	Mon Nov 02 09:20:13 2015 -0500
+++ b/mutation_analysis.r	Mon Nov 02 09:48:00 2015 -0500
@@ -95,7 +95,13 @@
                     "CDR1.IMGT.c.a",
                     "CDR2.IMGT.c.g",
                     "CDR2.IMGT.c.a",
-                    "FR1.IMGT.c.t")
+                    "FR1.IMGT.c.t",
+                    "FR1.IMGT.Nb.of.silent.mutations",
+                    "FR2.IMGT.Nb.of.silent.mutations",
+                    "FR3.IMGT.Nb.of.silent.mutations",
+                    "FR1.IMGT.Nb.of.nonsilent.mutations",
+                    "FR2.IMGT.Nb.of.nonsilent.mutations",
+                    "FR3.IMGT.Nb.of.nonsilent.mutations")
 
 for(col in cleanup_columns){
   dat[,col] = gsub("\\(.*\\)", "", dat[,col])