Mercurial > repos > davidvanzessen > mutation_analysis

diff tool_dependencies.xml @ 12:257e98fd3b54 draft

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author davidvanzessen
date Mon, 30 Mar 2015 05:06:45 -0400
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children 6f8392d090bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Mar 30 05:06:45 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+	<set_environment version="1.0">            
+  </set_environment>
+    
+	<package name="blastn" version="1.0.0"> 
+        <install version="1.0">
+            <actions>
+							<action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action>
+							<action type="move_file">
+								<source>bin/blastn</source>
+								<destination>$INSTALL_DIR</destination>
+							</action>
+							<action type="set_environment">
+								<environment_variable name="BLASTN" action="set_to">$INSTALL_DIR</environment_variable>
+							</action>
+            </actions>
+        </install>
+        <readme>
+					downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable
+        </readme>
+    </package>
+</tool_dependency>
+