Mercurial > repos > davidvanzessen > mutation_analysis

comparison tool_dependencies.xml @ 12:257e98fd3b54 draft

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author davidvanzessen
date Mon, 30 Mar 2015 05:06:45 -0400
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11:b0242cd1da34 12:257e98fd3b54
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 </set_environment>
5
6 <package name="blastn" version="1.0.0">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action>
10 <action type="move_file">
11 <source>bin/blastn</source>
12 <destination>$INSTALL_DIR</destination>
13 </action>
14 <action type="set_environment">
15 <environment_variable name="BLASTN" action="set_to">$INSTALL_DIR</environment_variable>
16 </action>
17 </actions>
18 </install>
19 <readme>
20 downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable
21 </readme>
22 </package>
23 </tool_dependency>
24