Mercurial > repos > davidvanzessen > mutation_analysis

diff mutation_analysis.xml @ 123:0453ea4d9f14 draft

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author davidvanzessen
date Mon, 22 Aug 2016 07:00:23 -0400
parents 31cca6d3722a
children
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--- a/mutation_analysis.xml	Wed Aug 17 08:29:07 2016 -0400
+++ b/mutation_analysis.xml	Mon Aug 22 07:00:23 2016 -0400
@@ -25,11 +25,16 @@
 			<option value="no" selected="true">No</option>
 		</param>
 		<param name="unique" type="select" label="Remove duplicates based on" help="" >
-			<option value="AA.JUNCTION_V_subclass" selected="true">Top.V.Gene, CDR3.Seq, C region</option>
-			<option value="AA.JUNCTION_subclass">CDR3.Seq, C region</option>
-			<option value="AA.JUNCTION_V">CDR3.seq, Top.V.Gene</option>
-			<option value="AA.JUNCTION">CDR3.seq</option>
-			<option value="none">Don't remove duplicates</option>
+			<option value="VGene,AA.JUNCTION,best_match" selected="true">Top.V.Gene, CDR3.AA.Seq, C region</option>			
+			<option value="VGene,AA.JUNCTION">Top.V.Gene, CDR3.AA.Seq</option>
+			<option value="AA.JUNCTION,best_match">CDR3.AA.Seq, C region</option>
+			<option value="AA.JUNCTION">CDR3.AA.Seq</option>
+			
+			<option value="VGene,CDR3.IMGT.seq,best_match" selected="true">Top.V.Gene, CDR3.nt.Seq, C region</option>			
+			<option value="VGene,CDR3.IMGT.seq">Top.V.Gene, CDR3.nt.Seq</option>
+			<option value="CDR3.IMGT.seq,best_match">CDR3.nt.Seq, C region</option>
+			<option value="CDR3.IMGT.seq">CDR3.nt.Seq</option>
+			<option value="Sequence.ID">Don't remove duplicates</option>
 		</param>
 		<param name="class_filter" type="select" label="Class/Subclass filter" help="" >
 			<option value="70_70" selected="true">>70% class and >70% subclass</option>