Mercurial > repos > davidvanzessen > mutation_analysis

comparison mutation_analysis.xml @ 123:0453ea4d9f14 draft

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author davidvanzessen
date Mon, 22 Aug 2016 07:00:23 -0400
parents 31cca6d3722a
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122:3d64b3efd352 123:0453ea4d9f14
23 <option value="remove">Remove uniques (Based on nucleotide sequence + C)</option> 23 <option value="remove">Remove uniques (Based on nucleotide sequence + C)</option>
24 <option value="keep">Keep uniques (Based on nucleotide sequence + C)</option> 24 <option value="keep">Keep uniques (Based on nucleotide sequence + C)</option>
25 <option value="no" selected="true">No</option> 25 <option value="no" selected="true">No</option>
26 </param> 26 </param>
27 <param name="unique" type="select" label="Remove duplicates based on" help="" > 27 <param name="unique" type="select" label="Remove duplicates based on" help="" >
28 <option value="AA.JUNCTION_V_subclass" selected="true">Top.V.Gene, CDR3.Seq, C region</option> 28 <option value="VGene,AA.JUNCTION,best_match" selected="true">Top.V.Gene, CDR3.AA.Seq, C region</option>
29 <option value="AA.JUNCTION_subclass">CDR3.Seq, C region</option> 29 <option value="VGene,AA.JUNCTION">Top.V.Gene, CDR3.AA.Seq</option>
30 <option value="AA.JUNCTION_V">CDR3.seq, Top.V.Gene</option> 30 <option value="AA.JUNCTION,best_match">CDR3.AA.Seq, C region</option>
31 <option value="AA.JUNCTION">CDR3.seq</option> 31 <option value="AA.JUNCTION">CDR3.AA.Seq</option>
32 <option value="none">Don't remove duplicates</option> 32
33 <option value="VGene,CDR3.IMGT.seq,best_match" selected="true">Top.V.Gene, CDR3.nt.Seq, C region</option>
34 <option value="VGene,CDR3.IMGT.seq">Top.V.Gene, CDR3.nt.Seq</option>
35 <option value="CDR3.IMGT.seq,best_match">CDR3.nt.Seq, C region</option>
36 <option value="CDR3.IMGT.seq">CDR3.nt.Seq</option>
37 <option value="Sequence.ID">Don't remove duplicates</option>
33 </param> 38 </param>
34 <param name="class_filter" type="select" label="Class/Subclass filter" help="" > 39 <param name="class_filter" type="select" label="Class/Subclass filter" help="" >
35 <option value="70_70" selected="true">>70% class and >70% subclass</option> 40 <option value="70_70" selected="true">>70% class and >70% subclass</option>
36 <option value="60_55">>60% class and >55% subclass</option> 41 <option value="60_55">>60% class and >55% subclass</option>
37 <option value="70_0">>70% class</option> 42 <option value="70_0">>70% class</option>