Mercurial > repos > davidvanzessen > mutation_analysis

comparison tool_dependencies.xml @ 114:e7b550d52eb7 draft

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author davidvanzessen
date Tue, 09 Aug 2016 07:20:41 -0400
parents 8a40634fd4b3
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113:b84477f57318 114:e7b550d52eb7
4 </set_environment> 4 </set_environment>
5 5
6 <package name="blastn" version="1.0"> 6 <package name="blastn" version="1.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action> 9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action>
10 <action type="move_file"> 10 <action type="move_file">
11 <source>bin/blastn</source> 11 <source>bin/blastn</source>
12 <destination>$INSTALL_DIR</destination> 12 <destination>$INSTALL_DIR</destination>
13 </action> 13 </action>
14 <action type="set_environment"> 14 <action type="set_environment">
15 <environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable> 15 <environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable>
16 </action> 16 </action>
17 </actions> 17 </actions>
18 </install> 18 </install>
19 <readme> 19 <readme>
20 downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable 20 downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable
21 </readme> 21 </readme>