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annotate filter.r @ 0:74d2bc479bee draft

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author davidvanzessen
date Mon, 18 Aug 2014 04:04:37 -0400
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1 args <- commandArgs(trailingOnly = TRUE)
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3 input = args[1]
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4 filterf = args[2]
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5 output = args[3]
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8 dat = read.table(input, header=T, sep="\t", fill=T, stringsAsFactors=F)
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9 filterdat = read.table(filterf, header=T, sep="\t", fill=T, stringsAsFactors=F)
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11 dat = dat[dat$Sequence.ID %in% filterdat$ID,]
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12
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13 write.table(x=dat, file=output, sep="\t",quote=F,row.names=F,col.names=T)