Mercurial > repos > davidvanzessen > imgt_loader_igg

changeset 6:5b030e48b308 draft

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Uploaded
author davidvanzessen
date Mon, 07 Jul 2014 09:54:42 -0400
parents 387fce4a1dd4
children 04e72fc8b2c4
files imgtconvert.py
diffstat 1 files changed, 6 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/imgtconvert.py	Mon Jul 07 09:48:59 2014 -0400
+++ b/imgtconvert.py	Mon Jul 07 09:54:42 2014 -0400
@@ -47,9 +47,12 @@
 
 outFile = args.output
 
-fSummary = pd.read_csv(triplets[0][0], sep="\t", low_memory=False)
-fSequence = pd.read_csv(triplets[0][1], sep="\t", low_memory=False)
-fJunction = pd.read_csv(triplets[0][2], sep="\t", low_memory=False)
+#fSummary = pd.read_csv(triplets[0][0], sep="\t", low_memory=False)
+fSummary = pd.read_csv(triplets[0][0], sep="\t")
+#fSequence = pd.read_csv(triplets[0][1], sep="\t", low_memory=False)
+fSequence = pd.read_csv(triplets[0][1], sep="\t")
+#fJunction = pd.read_csv(triplets[0][2], sep="\t", low_memory=False)
+fJunction = pd.read_csv(triplets[0][2], sep="\t")
 tmp = fSummary[["Sequence ID", "JUNCTION frame", "V-GENE and allele", "D-GENE and allele", "J-GENE and allele"]]
 
 tmp["CDR1 Seq"] = fSequence["CDR1-IMGT"]