# HG changeset patch
# User davidvanzessen
# Date 1404741282 14400
# Node ID 5b030e48b3089068631473dd43d4a86c2899506d
# Parent  387fce4a1dd41a0b87f0283e8fb2cb53c1f17883
Uploaded

diff -r 387fce4a1dd4 -r 5b030e48b308 imgtconvert.py
--- a/imgtconvert.py	Mon Jul 07 09:48:59 2014 -0400
+++ b/imgtconvert.py	Mon Jul 07 09:54:42 2014 -0400
@@ -47,9 +47,12 @@
 
 outFile = args.output
 
-fSummary = pd.read_csv(triplets[0][0], sep="\t", low_memory=False)
-fSequence = pd.read_csv(triplets[0][1], sep="\t", low_memory=False)
-fJunction = pd.read_csv(triplets[0][2], sep="\t", low_memory=False)
+#fSummary = pd.read_csv(triplets[0][0], sep="\t", low_memory=False)
+fSummary = pd.read_csv(triplets[0][0], sep="\t")
+#fSequence = pd.read_csv(triplets[0][1], sep="\t", low_memory=False)
+fSequence = pd.read_csv(triplets[0][1], sep="\t")
+#fJunction = pd.read_csv(triplets[0][2], sep="\t", low_memory=False)
+fJunction = pd.read_csv(triplets[0][2], sep="\t")
 tmp = fSummary[["Sequence ID", "JUNCTION frame", "V-GENE and allele", "D-GENE and allele", "J-GENE and allele"]]
 
 tmp["CDR1 Seq"] = fSequence["CDR1-IMGT"]