Mercurial > repos > davidvanzessen > imgt_loader_igg

view imgtconvert.xml @ 0:f8ba6ab5514b draft

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author davidvanzessen
date Thu, 23 Jan 2014 08:09:30 -0500
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<tool id="imgt_loader_igg" name="IMGT Loader" version="1.0">
	<description> </description>
	<command interpreter="bash">
		imgtconvert.sh $in_file $out_file
	</command>
	<inputs>
        <param name="in_file" type="data" label="Archive with files" />
	</inputs>
	<outputs>
		<data format="tabular" name="out_file" />
	</outputs>
	<help>
		Converting all 1_Summary, 5_AA-sequence and 6_Junction files belonging to a sample from an archive (supported: 7z, rar, tar, tar.bz2, tar.gz and zip) into a single file to be used in the Immune repertoire toolchain (Step 3)
	</help>

</tool>