Mercurial > repos > davidvanzessen > imgt_loader_igg

diff imgtconvert.xml @ 0:f8ba6ab5514b draft

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author davidvanzessen
date Thu, 23 Jan 2014 08:09:30 -0500
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children 021d39f6bb0e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imgtconvert.xml	Thu Jan 23 08:09:30 2014 -0500
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+<tool id="imgt_loader_igg" name="IMGT Loader" version="1.0">
+	<description> </description>
+	<command interpreter="bash">
+		imgtconvert.sh $in_file $out_file
+	</command>
+	<inputs>
+        <param name="in_file" type="data" label="Archive with files" />
+	</inputs>
+	<outputs>
+		<data format="tabular" name="out_file" />
+	</outputs>
+	<help>
+		Converting all 1_Summary, 5_AA-sequence and 6_Junction files belonging to a sample from an archive (supported: 7z, rar, tar, tar.bz2, tar.gz and zip) into a single file to be used in the Immune repertoire toolchain (Step 3)
+	</help>
+
+</tool>