Mercurial > repos > davidvanzessen > imgt_loader_igg

diff imgt_loader.xml @ 7:04e72fc8b2c4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Fri, 05 Sep 2014 04:21:48 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imgt_loader.xml	Fri Sep 05 04:21:48 2014 -0400
@@ -0,0 +1,16 @@
+<tool id="imgt_loader_igg" name="IMGT Loader" version="1.0">
+	<description> </description>
+	<command interpreter="bash">
+		imgt_loader.sh $in_file $out_file "tmp"
+	</command>
+	<inputs>
+        <param name="in_file" type="data" label="Archive with files" />
+	</inputs>
+	<outputs>
+		<data format="tabular" name="out_file" label="IMGT Loader on ${in_file.name}"/>
+	</outputs>
+	<help>
+		Converting all 1_Summary, 5_AA-sequence and 6_Junction files belonging to a sample from an archive (supported: 7z, rar, tar, tar.bz2, tar.gz and zip) into a single file to be used in the Immune repertoire toolchain (Step 3)
+	</help>
+
+</tool>