Mercurial > repos > davidvanzessen > imgt_convert

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author davidvanzessen
date Thu, 23 Jan 2014 04:24:36 -0500
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1 <tool id="imgt_loader_igg" name="IMGT Loader" version="1.0">
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2 <description> </description>
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3 <command interpreter="bash">
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4 imgtconvert.sh $in_file $out_file
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5 </command>
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6 <inputs>
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7 <param name="in_file" type="data" label="Archive with files" />
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8 </inputs>
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9 <outputs>
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10 <data format="tabular" name="out_file" />
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11 </outputs>
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12 <help>
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13 Converting all 1_Summary, 5_AA-sequence and 6_Junction files belonging to a sample from an archive (supported: 7z, rar, tar, tar.bz2, tar.gz and zip) into a single file to be used in the Immune repertoire toolchain (Step 3)
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14 </help>
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16 </tool>