Mercurial > repos > davidvanzessen > imgt_convert

diff imgtconvert.xml @ 0:14e80e5c3353 draft

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author davidvanzessen
date Wed, 13 Nov 2013 09:36:48 -0500
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children 75fe272c4b78
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imgtconvert.xml	Wed Nov 13 09:36:48 2013 -0500
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+<tool id="imgtconvert" name="IMGT Convert" version="1.0">
+	<description>Converting the 1_, 5_ and 6_ files</description>
+	<command interpreter="bash">
+		imgtconvert.sh $in_file $out_file
+	</command>
+	<inputs>
+        <param name="in_file" type="data" label="Archive with files" />
+	</inputs>
+	<outputs>
+		<data format="tabular" name="out_file" />
+	</outputs>
+	<help>
+		Converting all 1_Summary, 5_AA-sequence and 6_Junction files belonging to a sample into a single file to be used in the Immune repertoire toolchain (Step 3)
+	</help>
+
+</tool>