view igparse.xml @ 2:c86b568de930 draft

Uploaded
author davidvanzessen
date Thu, 26 Sep 2013 11:09:57 -0400
parents d55fb6a8df5a
children a6a01df3aff6
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<tool id="igparse" name="igBLASTreport parser" version="0.2.0">
	<description>Parse igBLASTn report (output format -m 3)</description>
	<command interpreter="perl">
		igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
	</command>
	<inputs>
		<param name="input" type="data" format="text" label="igBLASTn report"/>
		<param name="record" type="integer" value="0" label="Choose a single record or 0 for all">
			<validator type="in_range" min="0" max="1000000" />
		</param>
	</inputs>
	<outputs>
		<data name="output" format="tabular" label="${input.name}-parsed" />
	</outputs>
	<help>
		there is no help
	</help>
</tool>