Mercurial > repos > davidvanzessen > igblastparser_igg

diff igparse.xml @ 0:69fb40d4edac draft

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author davidvanzessen
date Thu, 23 Jan 2014 08:05:06 -0500
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children 0cb0a9b5234d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/igparse.xml	Thu Jan 23 08:05:06 2014 -0500
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+<tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0">
+	<description> </description>
+	<command interpreter="perl">
+		igparse.pl $input 0 | grep -v "D:" | cut -f2- > $output
+	</command>
+	<inputs>
+		<param name="input" type="data" format="text" label="igBLASTn report"/>
+	</inputs>
+	<outputs>
+		<data name="output" format="tabular" label="${input.name}-parsed" />
+	</outputs>
+	<help>
+		Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
+	</help>
+</tool>