Mercurial > repos > davidvanzessen > igblastparser_igg

comparison igparse.xml @ 0:69fb40d4edac draft

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author davidvanzessen
date Thu, 23 Jan 2014 08:05:06 -0500
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1 <tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0">
2 <description> </description>
3 <command interpreter="perl">
4 igparse.pl $input 0 | grep -v "D:" | cut -f2- > $output
5 </command>
6 <inputs>
7 <param name="input" type="data" format="text" label="igBLASTn report"/>
8 </inputs>
9 <outputs>
10 <data name="output" format="tabular" label="${input.name}-parsed" />
11 </outputs>
12 <help>
13 Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
14 </help>
15 </tool>