Mercurial > repos > davidvanzessen > igblastparser_igg

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author davidvanzessen
date Thu, 09 Apr 2015 10:28:57 -0400
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1 <tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0">
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2 <description> </description>
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3 <command interpreter="perl">
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4 igparse.pl $input 0 2>/dev/null | grep -v "D:" | cut -f2- > $output
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5 </command>
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6 <inputs>
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7 <param name="input" type="data" format="text" label="igBLASTn report"/>
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8 </inputs>
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9 <outputs>
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10 <data name="output" format="tabular" label="${input.name}-parsed" />
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11 </outputs>
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12 <help>
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13 Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
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14 </help>
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15 </tool>