Mercurial > repos > davidvanzessen > igblast_human

view tool_dependencies.xml @ 0:a5954de04a3d draft

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author davidvanzessen
date Mon, 23 Sep 2013 10:00:34 -0400
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<?xml version="1.0"?>
<tool_dependency>
	<set_environment version="1.0">            
    </set_environment>
    
	<package name="R" version="4.6.3"> 
        <install version="1.0">
            <actions>
            	<action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
                <action type="shell_command">tar -zxvf ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
                
                <action type="set_environment">
                	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
			Installs R with apt-get.
        </readme>
    </package>
</tool_dependency>