Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 53:fe9acb633402 draft

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author davidvanzessen
date Wed, 27 Nov 2013 07:12:36 -0500
parents 8da1f108446d
children ddc765e7142c
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52:8da1f108446d 53:fe9acb633402
21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
22 </action> 22 </action>
23 <action type="set_environment"> 23 <action type="set_environment">
24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> 24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
25 </action> 25 </action>
26 <action type="shell_command">echo "$REPOSITORY_INSTALL_DIR"</action> 26 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
27 <action type="shell_command">unzip $REPOSITORY_INSTALL_DIR/database.zip -d $INSTALL_DIR/ncbi-igblast-1.0.0/</action> 27 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
28
29 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action>
30
31 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"</action>
32
33 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file"</action>
28 34
29 35
30 </actions> 36 </actions>
31 </install> 37 </install>
32 <readme> 38 <readme>