Mercurial > repos > davidvanzessen > igblast_human
comparison tool_dependencies.xml @ 4:eed76d900bc0 draft
Uploaded
author | davidvanzessen |
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date | Tue, 24 Sep 2013 04:15:51 -0400 |
parents | 65f8bb1b0701 |
children | 906900f8e32c |
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3:65f8bb1b0701 | 4:eed76d900bc0 |
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9 <action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action> | 9 <action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action> |
10 <action type="move_file"> | 10 <action type="move_file"> |
11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source> | 11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source> |
12 <destination>$INSTALL_DIR</destination> | 12 <destination>$INSTALL_DIR</destination> |
13 </action> | 13 </action> |
14 <action type="shell_command">tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz</action> | 14 <action type="make_directory"> |
15 $INSTALL_DIR/igblast | |
16 </action> | |
17 <action type="shell_command">tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR/igblast</action> | |
15 | 18 |
16 <action type="set_environment"> | 19 <action type="set_environment"> |
17 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux</environment_variable> | 20 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/igblast</environment_variable> |
18 </action> | 21 </action> |
19 </actions> | 22 </actions> |
20 </install> | 23 </install> |
21 <readme> | 24 <readme> |
22 Installs R with apt-get. | 25 Installs R with apt-get. |