Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 4:eed76d900bc0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 04:15:51 -0400
parents 65f8bb1b0701
children 906900f8e32c
comparison
equal deleted inserted replaced
3:65f8bb1b0701 4:eed76d900bc0
9 <action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action> 9 <action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
10 <action type="move_file"> 10 <action type="move_file">
11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source> 11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
12 <destination>$INSTALL_DIR</destination> 12 <destination>$INSTALL_DIR</destination>
13 </action> 13 </action>
14 <action type="shell_command">tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz</action> 14 <action type="make_directory">
15 $INSTALL_DIR/igblast
16 </action>
17 <action type="shell_command">tar -zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR/igblast</action>
15 18
16 <action type="set_environment"> 19 <action type="set_environment">
17 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux</environment_variable> 20 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/igblast</environment_variable>
18 </action> 21 </action>
19 </actions> 22 </actions>
20 </install> 23 </install>
21 <readme> 24 <readme>
22 Installs R with apt-get. 25 Installs R with apt-get.